Strain Fitness in Pseudomonas putida KT2440 around PP_2478

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
2,823,394	-				+1.5
2,823,521	-				-1.5
2,823,557	+				+0.2
2,823,582	+				+0.6
2,823,582	+				-0.6
2,823,582	+				+0.5
2,823,583	-				+0.7
2,823,583	-				-0.2
2,823,588	+				-0.1
2,823,588	+				+0.2
2,823,746	+		PP_5528	0.67	+0.9
2,823,747	-		PP_5528	0.67	-0.8
2,823,807	-				-0.6
2,823,816	-				+0.5
2,823,842	-				+0.5
2,823,908	+				+0.5
2,823,979	-		PP_2477	0.12	-0.8
2,823,989	+		PP_2477	0.14	-1.2
2,823,990	-		PP_2477	0.14	-0.9
2,824,030	+		PP_2477	0.23	-1.3
2,824,030	+		PP_2477	0.23	+1.5
2,824,030	+		PP_2477	0.23	+0.3
2,824,030	+		PP_2477	0.23	-1.7
2,824,030	+		PP_2477	0.23	-1.1
2,824,031	-		PP_2477	0.23	+0.1
2,824,031	-		PP_2477	0.23	-0.5
2,824,333	+		PP_2477	0.88	+0.0
2,824,334	-		PP_2477	0.89	-0.5
2,824,334	-		PP_2477	0.89	-0.7
2,824,399	+				-0.1
2,824,415	-				+1.2
2,824,417	+				-0.4
2,824,418	-				+0.7
2,824,418	-				+0.1
2,824,418	-				-1.1
2,824,418	-				+0.7
2,824,418	-				-0.1
2,824,477	+				-0.5
2,824,477	+				-1.5
2,824,477	+				+0.4
2,824,477	+				-0.7
2,824,477	+				-0.1
2,824,562	+				+0.4
2,824,730	+		PP_2478	0.16	+0.1
2,824,731	-		PP_2478	0.16	-0.7
2,824,731	-		PP_2478	0.16	-0.9
2,824,732	+		PP_2478	0.16	+0.4
2,824,777	+		PP_2478	0.18	-0.5
2,824,778	-		PP_2478	0.18	-0.5
2,824,778	-		PP_2478	0.18	-2.0
2,824,786	+		PP_2478	0.18	-0.2
2,824,817	-		PP_2478	0.20	+0.1
2,824,929	-		PP_2478	0.25	-0.5
2,825,068	+		PP_2478	0.31	-0.3
2,825,068	+		PP_2478	0.31	-0.1
2,825,126	+		PP_2478	0.34	-0.5
2,825,732	+		PP_2478	0.61	+0.5
2,825,733	-		PP_2478	0.61	-1.4
2,825,743	+		PP_2478	0.62	+0.9
2,825,743	+		PP_2478	0.62	+1.0
2,825,854	+		PP_2478	0.67	-0.4
2,825,855	-		PP_2478	0.67	+0.3
2,825,878	-		PP_2478	0.68	-0.5
2,825,884	+		PP_2478	0.68	-0.4
2,825,884	+		PP_2478	0.68	-0.1
2,825,888	+		PP_2478	0.68	+0.1
2,825,888	+		PP_2478	0.68	+0.7
2,825,888	+		PP_2478	0.68	-1.1
2,825,888	+		PP_2478	0.68	-1.4
2,825,889	-		PP_2478	0.68	-1.5
2,825,916	-		PP_2478	0.70	-0.5
2,825,917	+		PP_2478	0.70	+2.4
2,825,917	+		PP_2478	0.70	-0.3
2,825,918	-		PP_2478	0.70	-0.1
2,825,984	+		PP_2478	0.73	-1.7
2,825,984	+		PP_2478	0.73	+0.1
2,825,984	+		PP_2478	0.73	-1.2
2,825,984	+		PP_2478	0.73	-2.9
2,825,985	-		PP_2478	0.73	-0.9
2,825,985	-		PP_2478	0.73	+0.3
2,825,985	-		PP_2478	0.73	-1.5
2,825,985	-		PP_2478	0.73	-1.7
2,825,985	-		PP_2478	0.73	-0.4
2,826,002	-		PP_2478	0.74	+0.9
2,826,121	+		PP_2478	0.79	+0.9
2,826,121	+		PP_2478	0.79	-0.6
2,826,179	+		PP_2478	0.82	-0.3
2,826,179	+		PP_2478	0.82	-0.2
2,826,179	+		PP_2478	0.82	-0.5
2,826,180	-		PP_2478	0.82	+0.4
2,826,180	-		PP_2478	0.82	-3.5
2,826,180	-		PP_2478	0.82	+0.3
2,826,180	-		PP_2478	0.82	-0.1
2,826,226	-		PP_2478	0.84	+0.5
2,826,226	-		PP_2478	0.84	+0.4
2,826,334	-		PP_2478	0.89	+1.5
2,826,334	-		PP_2478	0.89	-1.1
2,826,389	+				+0.0
2,826,389	+				+0.9
2,826,390	-				+0.0
2,826,479	-				-0.1
2,826,515	+				-0.4
2,826,515	+				+0.4
2,826,516	-				-0.5
2,826,516	-				+1.5
2,826,569	+				+0.3
2,826,611	-				-1.2
2,826,611	-				-1.9
2,826,611	-				+0.3
2,826,652	-				-0.2
2,826,685	-				+1.5
2,826,685	-				+0.9
2,826,720	-		PP_2479	0.11	-0.8
2,826,801	+		PP_2479	0.17	-0.1
2,826,888	+		PP_2479	0.25	+0.3
2,826,889	-		PP_2479	0.25	+1.7
2,826,889	-		PP_2479	0.25	+0.2
2,826,891	+		PP_2479	0.25	-0.1
2,826,906	+		PP_2479	0.26	-0.8
2,826,907	-		PP_2479	0.26	+0.4
2,826,907	-		PP_2479	0.26	-0.2
2,826,908	+		PP_2479	0.26	-0.8
2,826,909	-		PP_2479	0.26	-0.5
2,826,958	-		PP_2479	0.30	-0.3
2,827,120	-		PP_2479	0.43	+0.0
2,827,233	+		PP_2479	0.53	-1.1
2,827,234	-		PP_2479	0.53	-0.5
2,827,288	+		PP_2479	0.57	+0.1
2,827,288	+		PP_2479	0.57	-1.1
2,827,289	-		PP_2479	0.57	-0.1
2,827,289	-		PP_2479	0.57	-0.6
2,827,296	+		PP_2479	0.58	-1.0
2,827,296	+		PP_2479	0.58	-0.3
2,827,296	+		PP_2479	0.58	-0.2
2,827,297	-		PP_2479	0.58	+0.5