Strain Fitness in Pseudomonas putida KT2440 around PP_2415

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
2,760,524	-		PP_2413	0.74	-1.4
2,760,535	+				+0.6
2,760,535	+		PP_2413	0.75	-0.2
2,760,535	+		PP_2413	0.75	+0.3
2,760,535	+		PP_2413	0.75	+1.6
2,760,536	-		PP_2413	0.75	-0.1
2,760,536	-		PP_2413	0.75	-1.6
2,760,643	+		PP_2413	0.82	+1.1
2,760,644	-		PP_2413	0.82	+0.1
2,760,719	+		PP_2413	0.86	+0.9
2,760,719	+		PP_2413	0.86	+0.0
2,760,719	+		PP_2413	0.86	-2.3
2,760,720	-		PP_2413	0.86	+0.2
2,760,720	-		PP_2413	0.86	-2.0
2,760,720	-		PP_2413	0.86	+0.9
2,760,754	+		PP_2413	0.88	-0.5
2,760,754	+		PP_2413	0.88	-0.1
2,760,755	-		PP_2413	0.89	-0.3
2,760,841	-				+0.6
2,760,841	-				-1.4
2,760,841	-				-0.1
2,760,841	-				-0.2
2,760,841	-				-0.2
2,760,844	+				-1.7
2,760,844	+				-0.2
2,760,844	+				+0.1
2,760,845	-				-1.2
2,760,845	-				-1.1
2,760,845	-				-0.3
2,760,921	+				+0.9
2,760,922	-				-1.0
2,760,922	-				+1.6
2,760,922	-				+1.6
2,761,169	-		PP_2414	0.48	-3.8
2,761,169	-		PP_2414	0.48	-1.2
2,761,222	-		PP_2414	0.59	-5.4
2,761,300	+		PP_2414	0.75	-0.7
2,761,393	-				-1.1
2,761,453	+				-1.7
2,761,454	-				-1.0
2,761,455	+				-0.6
2,761,456	-				-2.0
2,761,456	-				-0.7
2,761,522	+		PP_2415	0.16	+0.1
2,761,693	+		PP_2415	0.43	-1.5
2,761,694	-		PP_2415	0.43	-0.5
2,761,694	-		PP_2415	0.43	-0.7
2,761,694	-		PP_2415	0.43	-1.3
2,761,694	-		PP_2415	0.43	+0.6
2,761,759	+		PP_2415	0.54	+0.1
2,761,760	-		PP_2415	0.54	-1.9
2,761,768	+		PP_2415	0.55	-0.6
2,761,769	-		PP_2415	0.55	-1.6
2,761,925	-		PP_2415	0.80	-1.1
2,761,925	-		PP_2415	0.80	-0.4
2,761,932	+		PP_2415	0.81	-0.2
2,761,932	+		PP_2415	0.81	-2.2
2,761,932	+		PP_2415	0.81	+1.0
2,761,933	-		PP_2415	0.81	-0.3
2,761,933	-				+1.6
2,762,043	-				-0.7
2,762,158	+				-0.4
2,762,159	-				+0.2
2,762,298	+		PP_2416	0.24	-0.4
2,762,344	-		PP_2416	0.30	+0.1
2,762,344	-		PP_2416	0.30	-0.3