Strain Fitness in Pseudomonas putida KT2440 around PP_2272

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
2,593,434	-		PP_5508	0.71	+0.5
2,593,569	+		PP_5509	0.16	-0.7
2,593,570	-		PP_5509	0.16	-0.8
2,593,757	+		PP_5509	0.62	+0.5
2,593,824	+		PP_5509	0.78	-0.2
2,593,825	-		PP_5509	0.78	+0.2
2,593,825	-		PP_5509	0.78	-1.7
2,593,845	+		PP_5509	0.83	+0.5
2,593,846	-		PP_5509	0.83	+0.6
2,593,866	+		PP_5509	0.88	-1.5
2,593,866	+		PP_5509	0.88	+0.2
2,593,866	+		PP_5509	0.88	+0.5
2,593,866	+		PP_5509	0.88	+0.5
2,593,867	-		PP_5509	0.89	+0.8
2,593,867	-		PP_5509	0.89	+0.2
2,593,872	+		PP_5509	0.90	+1.0
2,593,873	-				+0.5
2,593,873	-				+1.2
2,593,908	-				-0.2
2,593,911	+				-2.0
2,593,911	+				+1.5
2,593,911	+				-0.6
2,593,912	-				+0.7
2,593,912	-				+0.4
2,593,912	-				-0.2
2,594,076	+		PP_5510	0.82	+1.0
2,594,109	+				-0.8
2,594,109	+				-0.5
2,594,109	+				-0.0
2,594,110	-				+2.0
2,594,110	-				+0.2
2,594,187	+				+0.2
2,594,188	-				-0.4
2,594,188	-				+0.9
2,594,226	+				+0.5
2,594,226	+				+0.7
2,594,334	+				-0.4
2,594,335	-				+0.6
2,594,363	+				-0.3
2,594,363	+				-1.4
2,594,363	+				+0.4
2,594,364	-				-0.7
2,594,364	-				-2.9
2,594,364	-				-0.5
2,594,366	+				-0.1
2,594,367	-				-0.9
2,594,367	-				-0.7
2,594,367	-				+0.3
2,594,632	-		PP_2272	0.46	-0.7
2,594,645	+		PP_2272	0.48	-0.9
2,594,677	+		PP_2272	0.54	-1.4
2,594,677	+		PP_2272	0.54	-2.0
2,594,678	-		PP_2272	0.54	-0.4
2,594,769	+		PP_2272	0.69	+1.6
2,594,769	+		PP_2272	0.69	-1.3
2,594,769	+		PP_2272	0.69	-0.2
2,594,769	+		PP_2272	0.69	-0.1
2,594,769	+		PP_2272	0.69	-0.8
2,594,770	-		PP_2272	0.69	-0.6
2,594,770	-		PP_2272	0.69	-0.2
2,594,779	-				+0.0
2,594,914	-				-0.5
2,594,914	-				+0.7
2,594,914	-				-1.0
2,595,124	-				-0.4
2,595,254	+				-0.4
2,595,352	-				+0.2
2,595,378	+				-1.5
2,595,561	+		PP_2273	0.15	-0.3
2,595,562	-		PP_2273	0.15	-0.1
2,595,645	+		PP_2273	0.19	+0.1
2,595,705	+		PP_2273	0.22	-1.4
2,595,706	-		PP_2273	0.22	+1.0
2,595,706	-		PP_2273	0.22	-0.1