Strain Fitness in Pseudomonas putida KT2440 around PP_2041

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
2,319,372	+		PP_2040	0.30	-0.4
2,319,372	+		PP_2040	0.30	+0.3
2,319,372	+		PP_2040	0.30	-0.6
2,319,372	+		PP_2040	0.30	-0.3
2,319,373	-		PP_2040	0.30	-0.3
2,319,484	-		PP_2040	0.38	-0.2
2,319,660	+		PP_2040	0.52	+0.9
2,319,660	+		PP_2040	0.52	-0.1
2,319,660	+		PP_2040	0.52	-1.0
2,319,661	-		PP_2040	0.52	-0.1
2,319,661	-		PP_2040	0.52	+0.3
2,319,661	-		PP_2040	0.52	-0.5
2,319,661	-		PP_2040	0.52	+2.0
2,319,661	-		PP_2040	0.52	+1.8
2,319,720	+		PP_2040	0.56	+0.4
2,319,720	+		PP_2040	0.56	+0.4
2,319,720	+		PP_2040	0.56	+0.9
2,319,993	+		PP_2040	0.78	+0.3
2,319,993	+		PP_2040	0.78	-2.1
2,319,993	+		PP_2040	0.78	-0.6
2,319,993	+		PP_2040	0.78	+0.1
2,319,993	+		PP_2040	0.78	+1.5
2,319,994	-		PP_2040	0.78	-0.5
2,320,333	+				+0.0
2,320,588	+		PP_2041	0.31	+1.0
2,320,589	-		PP_2041	0.31	-1.3
2,320,669	-		PP_2041	0.39	+0.0
2,320,744	+		PP_2041	0.47	-0.8
2,320,744	+		PP_2041	0.47	-0.9
2,320,744	+		PP_2041	0.47	-2.4
2,320,744	+		PP_2041	0.47	-2.2
2,320,745	-		PP_2041	0.48	-0.1
2,321,047	+		PP_2041	0.79	+0.6
2,321,047	+		PP_2041	0.79	-0.2
2,321,048	-		PP_2041	0.80	-1.0
2,321,133	+		PP_2041	0.89	-1.1
2,321,134	-		PP_2041	0.89	+0.8
2,321,134	-		PP_2041	0.89	-0.2
2,321,134	-		PP_2041	0.89	-0.4
2,321,290	+				+1.0
2,321,313	-				+0.9
2,321,313	-				-0.0
2,321,316	+				-0.2
2,321,316	+				+0.4
2,321,316	+				+0.5
2,321,316	+				-0.7
2,321,317	-				-0.3
2,321,317	-				-0.1
2,321,317	-				-1.0
2,321,325	+				-2.1
2,321,402	-				-0.7
2,321,402	-				+1.6
2,321,427	+				-0.7
2,321,431	-				+0.2
2,321,439	+				-0.3
2,321,439	+				-0.4
2,321,440	-				+0.8
2,321,440	-				+1.0
2,321,448	-				+1.3
2,321,467	-				-0.1
2,321,495	+				-0.8
2,321,496	-				+1.2
2,321,755	-		PP_2042	0.16	+0.4
2,321,758	+		PP_2042	0.16	+0.2
2,321,758	+		PP_2042	0.16	+0.2
2,321,758	+		PP_2042	0.16	+1.0
2,321,759	-		PP_2042	0.16	+0.6
2,321,759	-		PP_2042	0.16	+0.6
2,321,764	+		PP_2042	0.17	+0.9
2,321,765	-		PP_2042	0.17	-0.4
2,321,847	+		PP_2042	0.21	+0.4
2,321,872	+		PP_2042	0.22	-0.0
2,321,875	+		PP_2042	0.23	-0.2
2,321,875	+		PP_2042	0.23	-0.1
2,321,875	+		PP_2042	0.23	+0.4
2,321,876	-		PP_2042	0.23	-1.8
2,322,052	+		PP_2042	0.32	+0.4
2,322,052	+		PP_2042	0.32	-1.4
2,322,052	+		PP_2042	0.32	-0.0
2,322,053	-		PP_2042	0.32	+0.4
2,322,053	-		PP_2042	0.32	-0.3