Strain Fitness in Pseudomonas putida KT2440 around PP_1665

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
1,860,024	+		PP_1663	0.65	-0.1
1,860,024	+		PP_1663	0.65	+0.8
1,860,025	-		PP_1663	0.65	-0.3
1,860,110	-		PP_1663	0.77	-0.2
1,860,110	-		PP_1663	0.77	-1.1
1,860,110	-		PP_1663	0.77	-0.4
1,860,193	-		PP_1663	0.88	-0.9
1,860,274	+				-0.8
1,860,285	-				+1.9
1,860,331	+				-1.6
1,860,331	+				-2.0
1,860,332	-				+0.5
1,860,393	-		PP_1664	0.17	-0.1
1,860,416	-		PP_1664	0.20	-0.4
1,860,515	-		PP_1664	0.35	-4.6
1,860,515	-		PP_1664	0.35	-4.7
1,860,515	-		PP_1664	0.35	-4.3
1,860,564	+		PP_1664	0.43	+0.3
1,860,564	+		PP_1664	0.43	-4.6
1,860,565	-		PP_1664	0.43	-1.8
1,860,578	+		PP_1664	0.45	-0.7
1,860,578	+		PP_1664	0.45	-2.0
1,860,579	-		PP_1664	0.45	+0.9
1,860,579	-		PP_1664	0.45	+1.9
1,860,579	-		PP_1664	0.45	-1.1
1,860,907	+				-1.7
1,860,907	+				-2.0
1,860,913	+				-1.8
1,860,913	+				-2.0
1,860,913	+				+0.9
1,860,913	+				-0.9
1,860,913	+				-1.8
1,860,913	+				-2.3
1,860,913	+				-2.5
1,860,914	-				-1.4
1,860,914	-				+0.3
1,860,914	-				-1.8
1,862,009	-				-1.1
1,862,155	+				-0.7
1,862,156	-				-2.0
1,862,200	+				-0.1
1,862,200	+				-1.1
1,862,200	+				+0.8
1,862,200	+				-0.1
1,862,200	+				+2.1
1,862,200	+				-0.7
1,862,200	+				-0.1
1,862,201	-				+0.9
1,862,201	-				+0.1
1,862,201	-				+0.8
1,862,201	-				+0.6
1,862,201	-				-0.5
1,862,202	+				+1.9
1,862,202	+				-0.4
1,862,203	-				+0.6
1,862,203	-				-0.5
1,862,281	+				-0.6
1,862,330	-				-0.9
1,862,397	-				-0.8
1,862,397	-				+2.5
1,862,397	-				+1.0
1,862,467	+		PP_1666	0.14	-0.5
1,862,468	-		PP_1666	0.14	+1.3
1,862,497	+		PP_1666	0.17	-1.7
1,862,497	+		PP_1666	0.17	+0.2
1,862,497	+		PP_1666	0.17	-0.2
1,862,497	+		PP_1666	0.17	+0.5
1,862,614	+		PP_1666	0.28	-1.6
1,862,615	-		PP_1666	0.28	-0.9
1,862,883	-		PP_1666	0.53	-0.3
1,862,907	+		PP_1666	0.55	-1.5
1,862,908	-		PP_1666	0.56	+1.9
1,862,908	-		PP_1666	0.56	+1.6
1,862,908	-		PP_1666	0.56	-0.7