Strain Fitness in Pseudomonas putida KT2440 around PP_1354

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
1,542,198	+				+1.7
1,542,199	-				+2.1
1,542,297	-				+2.1
1,542,658	+				+2.1
1,542,742	+		PP_1353	0.61	+1.1
1,542,742	+		PP_1353	0.61	+2.1
1,542,742	+		PP_1353	0.61	+0.5
1,542,797	+		PP_1353	0.68	+2.1
1,542,798	-		PP_1353	0.68	+1.1
1,542,951	-		PP_1353	0.86	+2.1
1,542,980	+		PP_1353	0.89	+1.1
1,542,980	+		PP_1353	0.89	+1.1
1,542,980	+		PP_1353	0.89	+2.1
1,542,981	-		PP_1353	0.90	+2.1
1,543,067	+				+0.5
1,543,067	+				+1.1
1,543,067	+				+0.6
1,543,068	-				-0.8
1,543,122	+				+1.6
1,543,123	-				-0.3
1,543,123	-				+0.3
1,543,123	-				+0.1
1,543,123	-				-1.6
1,543,159	+				-0.4
1,543,160	-				-1.3
1,543,160	-				-2.7
1,543,160	-				-0.3
1,543,161	+				+0.9
1,543,161	+				+0.9
1,543,161	+				+0.8
1,543,161	+				+0.8
1,543,162	-				+0.1
1,543,162	-				-1.2
1,543,162	-				-0.4
1,543,212	+				-0.9
1,543,212	+				+0.6
1,543,212	+				-0.3
1,543,212	+				-0.5
1,543,212	+				-2.0
1,543,212	+				+0.2
1,543,213	-				+0.4
1,543,213	-				-1.3
1,543,213	-				+0.1
1,543,213	-				-1.2
1,543,213	-				+2.1
1,543,213	-				-0.9
1,543,214	+				-0.6
1,543,215	-				-1.8
1,543,215	-				-0.5
1,543,275	+				-0.7
1,543,275	+				-0.5
1,543,276	-				-1.2
1,543,276	-				-0.4
1,543,344	+		PP_1354	0.12	-0.5
1,543,344	+		PP_1354	0.12	+1.7
1,543,344	+		PP_1354	0.12	-0.6
1,543,344	+		PP_1354	0.12	-1.1
1,543,344	+		PP_1354	0.12	-0.5
1,543,344	+		PP_1354	0.12	-1.9
1,543,345	-		PP_1354	0.12	-1.2
1,543,348	+		PP_1354	0.12	-0.3
1,543,348	+		PP_1354	0.12	+1.1
1,543,349	-		PP_1354	0.12	+0.3
1,543,369	-		PP_1354	0.14	-1.4
1,543,387	+		PP_1354	0.15	-0.2
1,543,388	-		PP_1354	0.15	-0.3
1,543,607	-		PP_1354	0.33	-1.7
1,543,607	-		PP_1354	0.33	+0.9
1,543,752	+		PP_1354	0.45	+0.6
1,543,980	+		PP_1354	0.63	-2.0
1,543,981	-		PP_1354	0.63	-1.0
1,543,981	-		PP_1354	0.63	+0.0
1,543,981	-		PP_1354	0.63	+0.1
1,544,043	-		PP_1354	0.68	-1.0
1,544,094	+		PP_1354	0.72	-0.6
1,544,094	+		PP_1354	0.72	-0.2
1,544,211	+		PP_1354	0.81	-1.0
1,544,211	+		PP_1354	0.81	-0.2
1,544,212	-		PP_1354	0.82	-0.9
1,544,212	-		PP_1354	0.82	-1.4
1,544,432	-				-0.4
1,544,432	-				-2.1
1,544,474	-				-0.4
1,544,485	+				+0.0
1,544,485	+				+0.1
1,544,486	-				+0.6
1,544,486	-				-1.2
1,544,507	+				+1.6
1,544,519	+				+0.1
1,544,546	+				+1.1
1,544,547	-				-0.2
1,544,644	+				+0.1
1,544,645	-				-0.6
1,544,704	+				+0.3
1,544,705	-				-0.7
1,544,808	+		PP_1355	0.16	+0.0
1,544,809	-		PP_1355	0.16	-0.6
1,544,827	+		PP_1355	0.18	-0.6
1,544,828	-		PP_1355	0.18	-0.5
1,544,937	-		PP_1355	0.25	-0.3
1,545,078	+		PP_1355	0.34	-0.1
1,545,078	+		PP_1355	0.34	-0.3
1,545,078	+		PP_1355	0.34	-0.1
1,545,078	+		PP_1355	0.34	-0.6
1,545,078	+		PP_1355	0.34	+0.0
1,545,078	+		PP_1355	0.34	-0.4
1,545,079	-		PP_1355	0.34	+0.2
1,545,079	-		PP_1355	0.34	-0.2
1,545,079	-		PP_1355	0.34	-0.2
1,545,079	-		PP_1355	0.34	-0.4
1,545,079	-		PP_1355	0.34	-0.4
1,545,079	-		PP_1355	0.34	-0.5
1,545,123	+		PP_1355	0.37	-0.6
1,545,124	-		PP_1355	0.37	-0.2
1,545,124	-		PP_1355	0.37	-1.7
1,545,124	-		PP_1355	0.37	-0.3
1,545,255	+		PP_1355	0.45	-0.0
1,545,256	-		PP_1355	0.45	-0.5
1,545,256	-		PP_1355	0.45	+0.1
1,545,256	-		PP_1355	0.45	-0.3
1,545,256	-		PP_1355	0.45	-0.5
1,545,341	-		PP_1355	0.51	-2.0
1,545,341	-		PP_1355	0.51	-0.4