Strain Fitness in Pseudomonas putida KT2440 around PP_1102

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_1100 and PP_1101 are separated by 61 nucleotidesPP_1101 and PP_1102 are separated by 6 nucleotidesPP_1102 and PP_1103 overlap by 4 nucleotides PP_1100: PP_1100 - Deoxycytidine triphosphate deaminase, at 1,257,458 to 1,258,024 _1100 PP_1101: PP_1101 - conserved protein of unknown function, at 1,258,086 to 1,258,346 _1101 PP_1102: PP_1102 - conserved protein of unknown function, at 1,258,353 to 1,259,003 _1102 PP_1103: PP_1103 - ATP-dependent helicase, DEAD box family, at 1,259,000 to 1,261,450 _1103 Position (kb) 1258 1259 1260Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1257.388 kb on - strandat 1257.411 kb on + strandat 1257.411 kb on + strandat 1257.584 kb on + strandat 1257.591 kb on - strand, within PP_1100at 1257.591 kb on - strandat 1257.747 kb on - strand, within PP_1100at 1257.797 kb on + strandat 1257.966 kb on - strandat 1257.987 kb on - strandat 1258.072 kb on + strandat 1258.355 kb on - strandat 1258.388 kb on - strandat 1258.388 kb on - strandat 1258.449 kb on + strand, within PP_1102at 1258.449 kb on + strand, within PP_1102at 1258.533 kb on + strand, within PP_1102at 1258.533 kb on + strand, within PP_1102at 1258.533 kb on + strand, within PP_1102at 1258.533 kb on + strand, within PP_1102at 1258.534 kb on - strand, within PP_1102at 1258.534 kb on - strand, within PP_1102at 1258.534 kb on - strand, within PP_1102at 1258.534 kb on - strand, within PP_1102at 1258.939 kb on + strandat 1258.939 kb on + strandat 1258.996 kb on + strandat 1258.997 kb on - strandat 1259.210 kb on + strandat 1259.211 kb on - strandat 1259.211 kb on - strandat 1259.271 kb on + strand, within PP_1103at 1259.271 kb on + strand, within PP_1103at 1259.271 kb on + strand, within PP_1103at 1259.271 kb on + strand, within PP_1103at 1259.271 kb on + strand, within PP_1103at 1259.272 kb on - strand, within PP_1103at 1259.272 kb on - strand, within PP_1103at 1259.272 kb on - strand, within PP_1103at 1259.272 kb on - strand, within PP_1103at 1259.277 kb on - strand, within PP_1103at 1259.277 kb on - strand, within PP_1103at 1259.277 kb on - strand, within PP_1103at 1259.598 kb on + strand, within PP_1103at 1259.702 kb on + strand, within PP_1103at 1259.850 kb on + strand, within PP_1103at 1259.850 kb on + strand, within PP_1103at 1259.851 kb on - strand, within PP_1103at 1259.851 kb on - strand, within PP_1103at 1259.882 kb on + strand, within PP_1103at 1259.882 kb on + strand, within PP_1103at 1259.883 kb on - strand, within PP_1103at 1259.883 kb on - strand, within PP_1103at 1259.885 kb on + strand, within PP_1103at 1259.985 kb on + strand, within PP_1103at 1259.986 kb on - strand, within PP_1103at 1259.986 kb on - strand, within PP_1103at 1259.986 kb on - strand, within PP_1103

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
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1,257,388 - +2.2
1,257,411 + -1.0
1,257,411 + -0.6
1,257,584 + +2.2
1,257,591 - PP_1100 0.23 +2.2
1,257,591 - +2.2
1,257,747 - PP_1100 0.51 +1.2
1,257,797 + +1.2
1,257,966 - +2.2
1,257,987 - +2.2
1,258,072 + -0.4
1,258,355 - -0.2
1,258,388 - -0.8
1,258,388 - +0.5
1,258,449 + PP_1102 0.15 -0.1
1,258,449 + PP_1102 0.15 -0.4
1,258,533 + PP_1102 0.28 -0.5
1,258,533 + PP_1102 0.28 -0.8
1,258,533 + PP_1102 0.28 -0.8
1,258,533 + PP_1102 0.28 -0.2
1,258,534 - PP_1102 0.28 -1.3
1,258,534 - PP_1102 0.28 -0.2
1,258,534 - PP_1102 0.28 -1.4
1,258,534 - PP_1102 0.28 -2.9
1,258,939 + +0.0
1,258,939 + -2.0
1,258,996 + -0.2
1,258,997 - +0.6
1,259,210 + -1.4
1,259,211 - +1.2
1,259,211 - +0.6
1,259,271 + PP_1103 0.11 -0.5
1,259,271 + PP_1103 0.11 -0.1
1,259,271 + PP_1103 0.11 -0.2
1,259,271 + PP_1103 0.11 +0.8
1,259,271 + PP_1103 0.11 -1.2
1,259,272 - PP_1103 0.11 -1.1
1,259,272 - PP_1103 0.11 +0.2
1,259,272 - PP_1103 0.11 +0.2
1,259,272 - PP_1103 0.11 -0.0
1,259,277 - PP_1103 0.11 +0.8
1,259,277 - PP_1103 0.11 +0.5
1,259,277 - PP_1103 0.11 -0.2
1,259,598 + PP_1103 0.24 +0.9
1,259,702 + PP_1103 0.29 -0.4
1,259,850 + PP_1103 0.35 -0.8
1,259,850 + PP_1103 0.35 +0.9
1,259,851 - PP_1103 0.35 +0.3
1,259,851 - PP_1103 0.35 -1.9
1,259,882 + PP_1103 0.36 -0.3
1,259,882 + PP_1103 0.36 -0.2
1,259,883 - PP_1103 0.36 -1.1
1,259,883 - PP_1103 0.36 -0.8
1,259,885 + PP_1103 0.36 +0.3
1,259,985 + PP_1103 0.40 +1.0
1,259,986 - PP_1103 0.40 -0.8
1,259,986 - PP_1103 0.40 +0.2
1,259,986 - PP_1103 0.40 +0.2

Or see this region's nucleotide sequence