Strain Fitness in Pseudomonas putida KT2440 around PP_0968

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
1,107,018	-		PP_0967	0.16	-1.1
1,107,018	-		PP_0967	0.16	-1.5
1,107,063	-		PP_0967	0.20	-6.3
1,107,180	-		PP_0967	0.32	-3.4
1,107,188	+		PP_0967	0.32	-4.5
1,107,189	-		PP_0967	0.32	-2.8
1,107,197	+		PP_0967	0.33	-0.6
1,107,198	-		PP_0967	0.33	-3.9
1,107,198	-				+1.2
1,107,198	-		PP_0967	0.33	-3.5
1,107,270	-		PP_0967	0.40	-6.3
1,107,398	+		PP_0967	0.52	-3.1
1,107,398	+		PP_0967	0.52	-0.8
1,107,398	+		PP_0967	0.52	-2.7
1,107,399	-		PP_0967	0.53	-3.3
1,107,399	-		PP_0967	0.53	+0.7
1,107,498	+		PP_0967	0.62	-3.4
1,107,498	+		PP_0967	0.62	-1.8
1,107,592	+		PP_0967	0.71	-4.0
1,107,593	-		PP_0967	0.71	-4.8
1,107,629	+		PP_0967	0.74	-1.1
1,107,629	+		PP_0967	0.74	-2.3
1,107,654	+		PP_0967	0.77	-2.3
1,107,654	+		PP_0967	0.77	-5.4
1,107,654	+		PP_0967	0.77	-3.9
1,107,657	+		PP_0967	0.77	-1.8
1,107,657	+		PP_0967	0.77	-2.9
1,107,658	-		PP_0967	0.77	-2.7
1,107,844	+				-0.8
1,107,845	-				-1.3
1,107,900	+				+0.3
1,107,900	+				-0.1
1,107,900	+				+0.2
1,107,901	-				+0.7
1,107,901	-				+0.2
1,107,901	-				-0.6
1,107,922	+				+0.6
1,108,000	+				-0.5
1,108,015	+				-0.0
1,108,032	+				-1.9
1,108,033	-				+0.8
1,108,076	+				-1.1
1,108,077	-				+0.2
1,108,181	+		PP_0968	0.14	-0.1
1,108,182	-		PP_0968	0.14	-0.4
1,108,193	-		PP_0968	0.15	-0.3
1,108,290	+		PP_0968	0.22	+0.2
1,108,291	-		PP_0968	0.23	+0.6
1,108,495	+		PP_0968	0.39	-0.2
1,108,514	+		PP_0968	0.40	+0.1
1,108,514	+		PP_0968	0.40	-1.3
1,108,515	-		PP_0968	0.41	+0.6
1,108,524	+		PP_0968	0.41	+0.9
1,108,525	-		PP_0968	0.41	+0.1
1,108,525	-		PP_0968	0.41	-1.2
1,108,566	+		PP_0968	0.45	-0.6
1,108,567	-		PP_0968	0.45	+0.1
1,108,567	-		PP_0968	0.45	-1.6
1,108,567	-		PP_0968	0.45	+0.5
1,108,621	+		PP_0968	0.49	+0.1
1,108,621	+		PP_0968	0.49	-0.7
1,108,633	+		PP_0968	0.50	-1.7
1,108,634	-		PP_0968	0.50	-0.7
1,108,758	+		PP_0968	0.60	-0.7
1,108,831	+		PP_0968	0.66	+0.9
1,108,831	+		PP_0968	0.66	-2.1
1,108,831	+		PP_0968	0.66	+0.7
1,108,832	-		PP_0968	0.66	-0.9
1,108,843	+		PP_0968	0.67	+0.2
1,108,994	+		PP_0968	0.79	-0.3
1,108,994	+		PP_0968	0.79	-0.3
1,109,015	-		PP_0968	0.81	-0.5
1,109,015	-		PP_0968	0.81	+2.3
1,109,015	-		PP_0968	0.81	+0.5
1,109,026	+		PP_0968	0.82	-0.2
1,109,071	+		PP_0968	0.85	-0.6
1,109,072	-		PP_0968	0.85	+0.7
1,109,072	-		PP_0968	0.85	+0.5
1,109,172	+				-0.0
1,109,263	+				+1.2
1,109,263	+				+1.0
1,109,264	-				-0.4
1,109,264	-				-0.5
1,109,264	-				+0.2
1,109,275	+				+0.4
1,109,275	+				-0.8
1,109,275	+				-1.5
1,109,297	+				-0.1
1,109,340	+				-0.9
1,109,340	+				-0.7
1,109,341	-				+0.5
1,109,548	+		PP_0969	0.33	+0.8
1,109,548	+		PP_0969	0.33	-0.5
1,109,602	-		PP_0969	0.41	-0.5
1,109,749	+		PP_0969	0.64	+0.7
1,109,750	-		PP_0969	0.64	+0.3
1,109,750	-		PP_0969	0.64	+0.3
1,109,750	-		PP_0969	0.64	-1.1
1,109,750	-		PP_0969	0.64	+0.7
1,109,750	-		PP_0969	0.64	-0.3
1,109,750	-		PP_0969	0.64	+0.3
1,109,811	-		PP_0969	0.73	+0.2
1,109,865	+		PP_0969	0.81	-2.1
1,109,865	+		PP_0969	0.81	-1.1
1,109,866	-		PP_0969	0.82	-1.0
1,109,866	-		PP_0969	0.82	+0.4
1,109,866	-		PP_0969	0.82	+0.5
1,109,866	-		PP_0969	0.82	-1.9
1,110,201	+		PP_0970	0.17	+1.1
1,110,201	+		PP_0970	0.17	+1.7
1,110,201	+		PP_0970	0.17	+0.2