Strain Fitness in Pseudomonas putida KT2440 around PP_0966

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
1,104,583	-				-4.5
1,104,628	+				-2.0
1,104,732	+		PP_0965	0.21	-1.6
1,104,732	+		PP_0965	0.21	-2.6
1,104,732	+		PP_0965	0.21	-2.8
1,104,732	+		PP_0965	0.21	-3.5
1,104,732	+		PP_0965	0.21	-2.6
1,104,733	-		PP_0965	0.21	-5.9
1,104,770	+		PP_0965	0.27	-2.9
1,104,770	+		PP_0965	0.27	-3.3
1,104,771	-		PP_0965	0.27	-1.3
1,104,771	-		PP_0965	0.27	-2.7
1,104,771	-		PP_0965	0.27	-5.9
1,104,771	-		PP_0965	0.27	-3.5
1,104,771	-		PP_0965	0.27	-3.6
1,104,827	+		PP_0965	0.36	-4.7
1,104,845	+		PP_0965	0.39	-2.9
1,104,846	-		PP_0965	0.39	-2.1
1,104,846	-		PP_0965	0.39	-3.3
1,104,898	-		PP_0965	0.47	-3.1
1,104,954	+		PP_0965	0.56	-4.5
1,104,955	-		PP_0965	0.56	-2.6
1,104,955	-		PP_0965	0.56	-4.7
1,104,966	-		PP_0965	0.58	-2.3
1,104,966	-		PP_0965	0.58	-1.7
1,104,966	-		PP_0965	0.58	-3.2
1,104,968	+		PP_0965	0.58	-5.5
1,104,968	+		PP_0965	0.58	-1.6
1,104,969	-		PP_0965	0.58	-1.6
1,105,008	-		PP_0965	0.64	-2.1
1,105,269	-				-1.8
1,105,279	+				-0.6
1,105,280	-				-2.2
1,105,317	-				-3.1
1,105,326	+				-0.5
1,105,326	+				-1.5
1,105,422	-				-1.6
1,105,441	+				+0.4
1,105,441	+				+0.8
1,105,441	+				-0.3
1,105,441	+				-1.2
1,105,442	-				-5.0
1,105,442	-				-2.0
1,105,442	-				-3.3
1,105,481	-				-2.5
1,105,503	+				-0.2
1,105,503	+				+0.0
1,105,503	+				+0.4
1,105,504	-				-3.3
1,105,504	-				+1.2
1,105,504	-				-1.6
1,105,504	-				-2.3
1,105,506	+				+0.2
1,105,507	-				-0.3
1,105,507	-				-2.8
1,105,507	-				-3.3
1,105,776	-		PP_0966	0.19	-3.4
1,105,778	+		PP_0966	0.19	-2.3
1,105,863	+		PP_0966	0.26	-1.7
1,105,926	+		PP_0966	0.31	-2.5
1,105,927	-		PP_0966	0.31	-1.7
1,105,927	-		PP_0966	0.31	-3.1
1,105,927	-		PP_0966	0.31	-3.0
1,105,927	-		PP_0966	0.31	+0.2
1,105,951	-		PP_0966	0.32	-1.8
1,106,184	+		PP_0966	0.50	-6.1
1,106,184	+		PP_0966	0.50	-2.5
1,106,184	+		PP_0966	0.50	-2.1
1,106,184	+		PP_0966	0.50	-1.7
1,106,184	+		PP_0966	0.50	-2.1
1,106,185	-		PP_0966	0.50	-2.6
1,106,185	-		PP_0966	0.50	-0.1
1,106,185	-		PP_0966	0.50	-2.6
1,106,185	-		PP_0966	0.50	-2.7
1,106,185	-		PP_0966	0.50	-2.6
1,106,185	-		PP_0966	0.50	-1.8
1,106,221	+		PP_0966	0.53	-4.2
1,106,222	-		PP_0966	0.53	-3.1
1,106,222	-		PP_0966	0.53	-1.6
1,106,426	+		PP_0966	0.68	-2.9
1,106,691	+		PP_0966	0.88	-2.6
1,106,691	+		PP_0966	0.88	-3.8
1,106,691	+		PP_0966	0.88	-4.6
1,106,691	+		PP_0966	0.88	-4.0
1,106,692	-		PP_0966	0.88	-5.3
1,106,692	-		PP_0966	0.88	-4.7
1,106,692	-		PP_0966	0.88	-5.3
1,106,692	-		PP_0966	0.88	-2.4
1,106,692	-		PP_0966	0.88	-2.8
1,106,814	+				-3.5
1,106,815	-				-2.9
1,106,819	+				-0.2
1,106,819	+				+0.2
1,106,891	+				-2.5
1,106,891	+				+1.2
1,106,891	+				-2.8
1,106,891	+				-4.3
1,106,892	-				-3.7
1,106,892	-				-1.5
1,107,018	-		PP_0967	0.16	-1.1
1,107,018	-		PP_0967	0.16	-1.5
1,107,063	-		PP_0967	0.20	-6.3
1,107,180	-		PP_0967	0.32	-3.4
1,107,188	+		PP_0967	0.32	-4.5
1,107,189	-		PP_0967	0.32	-2.8
1,107,197	+		PP_0967	0.33	-0.6
1,107,198	-		PP_0967	0.33	-3.9
1,107,198	-				+1.2
1,107,198	-		PP_0967	0.33	-3.5
1,107,270	-		PP_0967	0.40	-6.3
1,107,398	+		PP_0967	0.52	-3.1
1,107,398	+		PP_0967	0.52	-0.8
1,107,398	+		PP_0967	0.52	-2.7
1,107,399	-		PP_0967	0.53	-3.3
1,107,399	-		PP_0967	0.53	+0.7
1,107,498	+		PP_0967	0.62	-3.4
1,107,498	+		PP_0967	0.62	-1.8
1,107,592	+		PP_0967	0.71	-4.0
1,107,593	-		PP_0967	0.71	-4.8
1,107,629	+		PP_0967	0.74	-1.1
1,107,629	+		PP_0967	0.74	-2.3
1,107,654	+		PP_0967	0.77	-2.3
1,107,654	+		PP_0967	0.77	-5.4
1,107,654	+		PP_0967	0.77	-3.9
1,107,657	+		PP_0967	0.77	-1.8
1,107,657	+		PP_0967	0.77	-2.9
1,107,658	-		PP_0967	0.77	-2.7
1,107,844	+				-0.8
1,107,845	-				-1.3