Strain Fitness in Pseudomonas putida KT2440 around PP_0727

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0726 and PP_0727 overlap by 4 nucleotidesPP_0727 and PP_0728 overlap by 4 nucleotides PP_0726: PP_0726 - Transferase, at 843,518 to 844,243 _0726 PP_0727: PP_0727 - conserved protein of unknown function, at 844,240 to 844,842 _0727 PP_0728: PP_0728 - conserved protein of unknown function, at 844,839 to 846,008 _0728 Position (kb) 844 845Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 843.241 kb on - strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.275 kb on + strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.276 kb on - strandat 843.288 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.312 kb on + strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.313 kb on - strandat 843.314 kb on + strandat 843.355 kb on - strandat 843.355 kb on - strandat 843.459 kb on - strandat 843.480 kb on + strandat 843.492 kb on + strandat 843.531 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.543 kb on + strandat 843.545 kb on + strandat 843.636 kb on - strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.741 kb on + strand, within PP_0726at 843.742 kb on - strandat 843.742 kb on - strand, within PP_0726at 843.742 kb on - strand, within PP_0726at 843.784 kb on + strand, within PP_0726at 843.806 kb on + strand, within PP_0726at 843.879 kb on + strand, within PP_0726at 843.892 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.907 kb on + strand, within PP_0726at 843.908 kb on - strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.911 kb on + strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.912 kb on - strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.920 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.923 kb on + strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.924 kb on - strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.951 kb on + strand, within PP_0726at 843.952 kb on - strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.955 kb on + strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.956 kb on - strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 843.998 kb on + strand, within PP_0726at 844.039 kb on - strand, within PP_0726at 844.142 kb on + strand, within PP_0726at 844.143 kb on - strand, within PP_0726at 844.143 kb on - strand, within PP_0726at 844.159 kb on + strand, within PP_0726at 844.159 kb on + strand, within PP_0726at 844.166 kb on + strand, within PP_0726at 844.167 kb on - strand, within PP_0726at 844.202 kb on + strandat 844.202 kb on + strandat 844.298 kb on - strandat 844.329 kb on + strand, within PP_0727at 844.349 kb on + strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.350 kb on - strand, within PP_0727at 844.384 kb on + strand, within PP_0727at 844.385 kb on - strand, within PP_0727at 844.387 kb on + strand, within PP_0727at 844.388 kb on - strand, within PP_0727at 844.388 kb on - strand, within PP_0727at 844.422 kb on - strand, within PP_0727at 844.431 kb on - strand, within PP_0727at 844.431 kb on - strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.480 kb on + strand, within PP_0727at 844.481 kb on - strandat 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.481 kb on - strand, within PP_0727at 844.528 kb on + strand, within PP_0727at 844.528 kb on + strand, within PP_0727at 844.529 kb on - strand, within PP_0727at 844.547 kb on - strand, within PP_0727at 844.547 kb on - strand, within PP_0727at 844.657 kb on - strand, within PP_0727at 844.691 kb on - strand, within PP_0727at 844.725 kb on - strand, within PP_0727at 844.751 kb on - strand, within PP_0727at 844.751 kb on - strand, within PP_0727at 844.855 kb on - strandat 844.855 kb on - strandat 844.855 kb on - strandat 844.856 kb on + strandat 844.899 kb on + strandat 844.900 kb on - strandat 844.931 kb on + strandat 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.970 kb on + strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 844.971 kb on - strand, within PP_0728at 845.076 kb on + strand, within PP_0728at 845.077 kb on - strand, within PP_0728at 845.077 kb on - strand, within PP_0728at 845.179 kb on - strand, within PP_0728at 845.217 kb on + strand, within PP_0728at 845.349 kb on + strand, within PP_0728at 845.349 kb on + strand, within PP_0728at 845.350 kb on - strand, within PP_0728at 845.350 kb on - strand, within PP_0728at 845.367 kb on + strand, within PP_0728at 845.368 kb on - strand, within PP_0728at 845.401 kb on + strand, within PP_0728at 845.402 kb on - strand, within PP_0728at 845.402 kb on - strand, within PP_0728at 845.402 kb on - strand, within PP_0728at 845.407 kb on + strand, within PP_0728at 845.408 kb on - strand, within PP_0728at 845.408 kb on - strand, within PP_0728at 845.408 kb on - strand, within PP_0728at 845.432 kb on + strand, within PP_0728at 845.475 kb on - strand, within PP_0728at 845.526 kb on + strand, within PP_0728at 845.526 kb on + strand, within PP_0728at 845.526 kb on + strand, within PP_0728at 845.527 kb on - strand, within PP_0728at 845.562 kb on + strand, within PP_0728at 845.563 kb on - strand, within PP_0728at 845.584 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.619 kb on + strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.620 kb on - strand, within PP_0728at 845.626 kb on + strand, within PP_0728at 845.626 kb on + strand, within PP_0728at 845.626 kb on + strand, within PP_0728at 845.626 kb on + strand, within PP_0728at 845.627 kb on - strand, within PP_0728at 845.627 kb on - strandat 845.630 kb on + strand, within PP_0728at 845.672 kb on + strand, within PP_0728at 845.673 kb on - strand, within PP_0728at 845.673 kb on - strand, within PP_0728at 845.673 kb on - strand, within PP_0728at 845.714 kb on + strand, within PP_0728at 845.714 kb on + strand, within PP_0728at 845.714 kb on + strand, within PP_0728at 845.715 kb on - strand, within PP_0728at 845.715 kb on - strand, within PP_0728at 845.715 kb on - strand, within PP_0728at 845.715 kb on - strand, within PP_0728at 845.754 kb on + strand, within PP_0728at 845.754 kb on + strand, within PP_0728at 845.754 kb on + strand, within PP_0728at 845.754 kb on + strand, within PP_0728at 845.754 kb on + strand, within PP_0728at 845.755 kb on - strand, within PP_0728at 845.757 kb on + strand, within PP_0728at 845.758 kb on - strand, within PP_0728at 845.784 kb on + strand, within PP_0728at 845.784 kb on + strand, within PP_0728at 845.796 kb on + strand, within PP_0728at 845.796 kb on + strand, within PP_0728

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
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843,241 - -0.2
843,275 + +0.5
843,275 + -0.1
843,275 + +0.0
843,276 - +0.4
843,276 - -0.1
843,276 - -0.3
843,276 - +0.9
843,288 + +0.0
843,312 + -0.3
843,312 + +0.6
843,312 + -0.1
843,312 + -0.1
843,312 + -0.4
843,312 + +0.9
843,312 + +0.0
843,312 + -0.4
843,313 - +1.0
843,313 - +0.4
843,313 - +2.0
843,313 - +0.4
843,313 - -0.3
843,313 - -1.1
843,314 + +0.9
843,355 - -0.9
843,355 - +1.2
843,459 - +0.4
843,480 + -0.3
843,492 + -0.0
843,531 + -1.1
843,543 + +0.7
843,543 + +0.0
843,543 + -0.2
843,543 + -1.0
843,545 + +0.0
843,636 - PP_0726 0.16 +0.3
843,741 + PP_0726 0.31 +0.8
843,741 + PP_0726 0.31 +0.8
843,741 + PP_0726 0.31 -0.7
843,742 - -0.2
843,742 - PP_0726 0.31 +0.0
843,742 - PP_0726 0.31 -0.9
843,784 + PP_0726 0.37 +1.2
843,806 + PP_0726 0.40 -0.9
843,879 + PP_0726 0.50 -1.2
843,892 + PP_0726 0.52 +2.1
843,907 + PP_0726 0.54 -2.3
843,907 + PP_0726 0.54 -0.4
843,907 + PP_0726 0.54 +0.4
843,908 - PP_0726 0.54 -0.5
843,911 + PP_0726 0.54 +1.3
843,911 + PP_0726 0.54 -0.2
843,911 + PP_0726 0.54 -0.3
843,912 - PP_0726 0.54 +0.3
843,912 - PP_0726 0.54 +0.8
843,920 + PP_0726 0.55 +0.2
843,920 + PP_0726 0.55 -1.0
843,920 + PP_0726 0.55 -0.5
843,923 + PP_0726 0.56 -1.0
843,923 + PP_0726 0.56 +0.6
843,924 - PP_0726 0.56 +0.4
843,924 - PP_0726 0.56 +0.1
843,924 - PP_0726 0.56 +0.6
843,924 - PP_0726 0.56 -0.8
843,951 + PP_0726 0.60 -0.7
843,951 + PP_0726 0.60 -0.5
843,951 + PP_0726 0.60 -1.7
843,952 - PP_0726 0.60 -1.2
843,955 + PP_0726 0.60 -0.8
843,955 + PP_0726 0.60 -1.1
843,955 + PP_0726 0.60 -1.1
843,955 + PP_0726 0.60 +0.5
843,955 + PP_0726 0.60 +0.0
843,956 - PP_0726 0.60 -0.2
843,956 - PP_0726 0.60 +1.2
843,956 - PP_0726 0.60 -0.4
843,998 + PP_0726 0.66 -0.3
843,998 + PP_0726 0.66 -0.3
844,039 - PP_0726 0.72 -0.1
844,142 + PP_0726 0.86 +0.2
844,143 - PP_0726 0.86 -0.7
844,143 - PP_0726 0.86 +0.0
844,159 + PP_0726 0.88 -1.7
844,159 + PP_0726 0.88 -0.4
844,166 + PP_0726 0.89 -0.2
844,167 - PP_0726 0.89 +1.0
844,202 + -0.3
844,202 + -1.2
844,298 - -0.4
844,329 + PP_0727 0.15 -1.2
844,349 + PP_0727 0.18 +1.0
844,350 - PP_0727 0.18 -1.2
844,350 - PP_0727 0.18 +0.8
844,350 - PP_0727 0.18 +0.6
844,384 + PP_0727 0.24 +0.0
844,385 - PP_0727 0.24 -1.1
844,387 + PP_0727 0.24 -2.5
844,388 - PP_0727 0.25 -1.2
844,388 - PP_0727 0.25 -0.6
844,422 - PP_0727 0.30 -0.2
844,431 - PP_0727 0.32 +0.7
844,431 - PP_0727 0.32 -0.2
844,480 + PP_0727 0.40 +1.7
844,480 + PP_0727 0.40 -0.0
844,480 + PP_0727 0.40 -1.2
844,481 - +1.8
844,481 - PP_0727 0.40 +0.0
844,481 - PP_0727 0.40 -1.0
844,481 - PP_0727 0.40 -1.6
844,481 - PP_0727 0.40 -1.2
844,481 - PP_0727 0.40 +0.5
844,528 + PP_0727 0.48 -1.9
844,528 + PP_0727 0.48 -1.2
844,529 - PP_0727 0.48 -0.4
844,547 - PP_0727 0.51 -1.4
844,547 - PP_0727 0.51 +0.5
844,657 - PP_0727 0.69 -0.1
844,691 - PP_0727 0.75 +0.2
844,725 - PP_0727 0.80 -0.8
844,751 - PP_0727 0.85 -0.6
844,751 - PP_0727 0.85 -0.1
844,855 - +0.3
844,855 - -1.5
844,855 - -1.5
844,856 + -0.7
844,899 + -0.3
844,900 - -0.2
844,931 + +0.6
844,970 + PP_0728 0.11 -0.0
844,970 + PP_0728 0.11 +1.1
844,970 + PP_0728 0.11 -0.5
844,970 + PP_0728 0.11 +0.1
844,971 - PP_0728 0.11 -1.4
844,971 - PP_0728 0.11 +0.2
844,971 - PP_0728 0.11 -0.9
844,971 - PP_0728 0.11 -1.1
845,076 + PP_0728 0.20 -1.0
845,077 - PP_0728 0.20 +0.6
845,077 - PP_0728 0.20 +0.8
845,179 - PP_0728 0.29 -1.0
845,217 + PP_0728 0.32 +0.6
845,349 + PP_0728 0.44 +2.1
845,349 + PP_0728 0.44 +0.1
845,350 - PP_0728 0.44 -2.5
845,350 - PP_0728 0.44 -0.2
845,367 + PP_0728 0.45 +0.2
845,368 - PP_0728 0.45 -2.5
845,401 + PP_0728 0.48 +1.1
845,402 - PP_0728 0.48 -0.2
845,402 - PP_0728 0.48 -0.2
845,402 - PP_0728 0.48 -0.9
845,407 + PP_0728 0.49 +1.1
845,408 - PP_0728 0.49 +0.8
845,408 - PP_0728 0.49 +0.7
845,408 - PP_0728 0.49 -0.4
845,432 + PP_0728 0.51 +0.6
845,475 - PP_0728 0.54 -1.6
845,526 + PP_0728 0.59 -0.3
845,526 + PP_0728 0.59 -0.1
845,526 + PP_0728 0.59 +1.2
845,527 - PP_0728 0.59 -1.7
845,562 + PP_0728 0.62 +0.1
845,563 - PP_0728 0.62 -0.5
845,584 + PP_0728 0.64 -0.8
845,619 + PP_0728 0.67 -2.5
845,619 + PP_0728 0.67 -0.5
845,619 + PP_0728 0.67 -1.8
845,619 + PP_0728 0.67 -0.2
845,619 + PP_0728 0.67 +0.8
845,619 + PP_0728 0.67 -0.4
845,620 - PP_0728 0.67 -0.7
845,620 - PP_0728 0.67 +0.3
845,620 - PP_0728 0.67 -0.3
845,620 - PP_0728 0.67 +0.4
845,620 - PP_0728 0.67 -0.1
845,620 - PP_0728 0.67 +0.2
845,620 - PP_0728 0.67 -0.3
845,626 + PP_0728 0.67 +0.6
845,626 + PP_0728 0.67 +0.9
845,626 + PP_0728 0.67 +0.2
845,626 + PP_0728 0.67 -0.2
845,627 - PP_0728 0.67 -2.5
845,627 - +2.3
845,630 + PP_0728 0.68 -0.0
845,672 + PP_0728 0.71 +1.6
845,673 - PP_0728 0.71 +0.1
845,673 - PP_0728 0.71 -0.0
845,673 - PP_0728 0.71 -1.8
845,714 + PP_0728 0.75 -0.7
845,714 + PP_0728 0.75 -1.2
845,714 + PP_0728 0.75 -0.2
845,715 - PP_0728 0.75 +0.0
845,715 - PP_0728 0.75 +0.6
845,715 - PP_0728 0.75 -0.5
845,715 - PP_0728 0.75 -0.0
845,754 + PP_0728 0.78 -1.1
845,754 + PP_0728 0.78 +3.8
845,754 + PP_0728 0.78 +0.8
845,754 + PP_0728 0.78 +0.3
845,754 + PP_0728 0.78 +0.8
845,755 - PP_0728 0.78 -1.4
845,757 + PP_0728 0.78 -0.4
845,758 - PP_0728 0.79 +0.8
845,784 + PP_0728 0.81 +1.3
845,784 + PP_0728 0.81 -0.8
845,796 + PP_0728 0.82 +0.3
845,796 + PP_0728 0.82 +0.5

Or see this region's nucleotide sequence