Strain Fitness in Pseudomonas putida KT2440 around PP_4896

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_4895 and PP_4896 are separated by 1 nucleotidesPP_4896 and PP_4897 overlap by 1 nucleotides PP_4895: PP_4895 - tRNA dimethylallyltransferase, at 5,564,614 to 5,565,585 _4895 PP_4896: PP_4896 - DNA mismatch repair protein MutL, at 5,565,587 to 5,567,485 _4896 PP_4897: PP_4897 - N-acetylmuramoyl-L-alanine amidase, at 5,567,485 to 5,568,915 _4897 Position (kb) 5565 5566 5567 5568Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5564.799 kb on - strand, within PP_4895at 5564.985 kb on - strand, within PP_4895at 5565.080 kb on - strand, within PP_4895at 5565.080 kb on - strand, within PP_4895at 5565.080 kb on - strand, within PP_4895at 5565.124 kb on - strand, within PP_4895at 5565.266 kb on + strand, within PP_4895at 5565.266 kb on + strand, within PP_4895at 5565.266 kb on + strand, within PP_4895at 5565.267 kb on - strand, within PP_4895at 5565.267 kb on - strand, within PP_4895at 5565.267 kb on - strand, within PP_4895at 5565.267 kb on - strand, within PP_4895at 5565.365 kb on + strand, within PP_4895at 5565.365 kb on + strand, within PP_4895at 5565.366 kb on - strand, within PP_4895at 5565.562 kb on + strandat 5565.562 kb on + strandat 5565.684 kb on + strandat 5565.810 kb on + strand, within PP_4896at 5565.810 kb on + strand, within PP_4896at 5565.818 kb on - strand, within PP_4896at 5566.059 kb on + strand, within PP_4896at 5566.059 kb on + strand, within PP_4896at 5566.059 kb on + strand, within PP_4896at 5566.060 kb on - strand, within PP_4896at 5566.064 kb on + strand, within PP_4896at 5566.128 kb on + strand, within PP_4896at 5566.128 kb on + strand, within PP_4896at 5566.128 kb on + strand, within PP_4896at 5566.128 kb on + strand, within PP_4896at 5566.128 kb on + strand, within PP_4896at 5566.129 kb on - strand, within PP_4896at 5566.129 kb on - strand, within PP_4896at 5566.129 kb on - strand, within PP_4896at 5566.129 kb on - strand, within PP_4896at 5566.129 kb on - strand, within PP_4896at 5566.132 kb on + strand, within PP_4896at 5566.132 kb on + strand, within PP_4896at 5566.133 kb on - strand, within PP_4896at 5566.133 kb on - strand, within PP_4896at 5566.133 kb on - strand, within PP_4896at 5566.155 kb on + strand, within PP_4896at 5566.155 kb on + strand, within PP_4896at 5566.155 kb on + strand, within PP_4896at 5566.156 kb on - strand, within PP_4896at 5566.156 kb on - strand, within PP_4896at 5566.156 kb on - strand, within PP_4896at 5566.160 kb on + strand, within PP_4896at 5566.228 kb on + strand, within PP_4896at 5566.228 kb on + strand, within PP_4896at 5566.229 kb on - strand, within PP_4896at 5566.229 kb on - strand, within PP_4896at 5566.230 kb on + strand, within PP_4896at 5566.230 kb on + strand, within PP_4896at 5566.231 kb on - strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.293 kb on + strand, within PP_4896at 5566.294 kb on - strand, within PP_4896at 5566.442 kb on + strand, within PP_4896at 5566.442 kb on + strand, within PP_4896at 5566.478 kb on + strand, within PP_4896at 5566.479 kb on - strand, within PP_4896at 5566.479 kb on - strand, within PP_4896at 5566.547 kb on + strand, within PP_4896at 5566.548 kb on - strand, within PP_4896at 5566.548 kb on - strand, within PP_4896at 5566.713 kb on + strand, within PP_4896at 5566.713 kb on + strand, within PP_4896at 5566.713 kb on + strand, within PP_4896at 5566.713 kb on + strand, within PP_4896at 5566.714 kb on - strand, within PP_4896at 5567.208 kb on - strand, within PP_4896at 5567.216 kb on + strand, within PP_4896at 5567.217 kb on - strand, within PP_4896at 5567.217 kb on - strand, within PP_4896at 5567.512 kb on + strandat 5567.512 kb on + strandat 5567.630 kb on - strand, within PP_4897at 5567.630 kb on - strand, within PP_4897at 5567.630 kb on - strand, within PP_4897at 5567.687 kb on + strand, within PP_4897at 5567.687 kb on + strand, within PP_4897at 5567.687 kb on + strand, within PP_4897at 5567.688 kb on - strand, within PP_4897at 5567.688 kb on - strand, within PP_4897at 5567.688 kb on - strand, within PP_4897

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
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5,564,799 - PP_4895 0.19 +1.9
5,564,985 - PP_4895 0.38 -0.7
5,565,080 - PP_4895 0.48 -0.1
5,565,080 - PP_4895 0.48 +0.4
5,565,080 - PP_4895 0.48 +2.4
5,565,124 - PP_4895 0.52 +2.4
5,565,266 + PP_4895 0.67 +0.9
5,565,266 + PP_4895 0.67 +0.9
5,565,266 + PP_4895 0.67 -1.7
5,565,267 - PP_4895 0.67 -1.0
5,565,267 - PP_4895 0.67 -1.3
5,565,267 - PP_4895 0.67 +1.6
5,565,267 - PP_4895 0.67 -0.8
5,565,365 + PP_4895 0.77 -0.4
5,565,365 + PP_4895 0.77 -2.1
5,565,366 - PP_4895 0.77 -0.1
5,565,562 + +2.4
5,565,562 + -1.3
5,565,684 + +2.4
5,565,810 + PP_4896 0.12 -0.1
5,565,810 + PP_4896 0.12 -0.1
5,565,818 - PP_4896 0.12 -0.7
5,566,059 + PP_4896 0.25 -0.4
5,566,059 + PP_4896 0.25 -2.2
5,566,059 + PP_4896 0.25 -0.9
5,566,060 - PP_4896 0.25 -1.4
5,566,064 + PP_4896 0.25 +0.1
5,566,128 + PP_4896 0.28 -1.5
5,566,128 + PP_4896 0.28 -0.5
5,566,128 + PP_4896 0.28 -2.6
5,566,128 + PP_4896 0.28 -2.1
5,566,128 + PP_4896 0.28 -1.8
5,566,129 - PP_4896 0.29 +0.5
5,566,129 - PP_4896 0.29 +0.9
5,566,129 - PP_4896 0.29 -0.1
5,566,129 - PP_4896 0.29 -1.8
5,566,129 - PP_4896 0.29 +0.6
5,566,132 + PP_4896 0.29 +0.6
5,566,132 + PP_4896 0.29 -0.1
5,566,133 - PP_4896 0.29 -1.4
5,566,133 - PP_4896 0.29 +0.6
5,566,133 - PP_4896 0.29 -1.6
5,566,155 + PP_4896 0.30 -1.5
5,566,155 + PP_4896 0.30 -1.3
5,566,155 + PP_4896 0.30 -0.1
5,566,156 - PP_4896 0.30 +1.5
5,566,156 - PP_4896 0.30 +0.1
5,566,156 - PP_4896 0.30 -0.5
5,566,160 + PP_4896 0.30 +0.5
5,566,228 + PP_4896 0.34 -3.4
5,566,228 + PP_4896 0.34 +1.5
5,566,229 - PP_4896 0.34 -0.3
5,566,229 - PP_4896 0.34 -0.8
5,566,230 + PP_4896 0.34 -2.2
5,566,230 + PP_4896 0.34 +1.5
5,566,231 - PP_4896 0.34 +0.1
5,566,293 + PP_4896 0.37 +1.1
5,566,293 + PP_4896 0.37 -0.0
5,566,293 + PP_4896 0.37 +2.1
5,566,293 + PP_4896 0.37 +0.1
5,566,293 + PP_4896 0.37 -1.9
5,566,293 + PP_4896 0.37 -1.9
5,566,294 - PP_4896 0.37 -2.6
5,566,442 + PP_4896 0.45 -1.9
5,566,442 + PP_4896 0.45 -0.4
5,566,478 + PP_4896 0.47 -2.5
5,566,479 - PP_4896 0.47 -1.1
5,566,479 - PP_4896 0.47 -1.4
5,566,547 + PP_4896 0.51 -0.9
5,566,548 - PP_4896 0.51 -0.9
5,566,548 - PP_4896 0.51 -0.1
5,566,713 + PP_4896 0.59 -1.5
5,566,713 + PP_4896 0.59 +2.0
5,566,713 + PP_4896 0.59 +0.5
5,566,713 + PP_4896 0.59 -0.5
5,566,714 - PP_4896 0.59 -1.5
5,567,208 - PP_4896 0.85 -0.2
5,567,216 + PP_4896 0.86 -0.8
5,567,217 - PP_4896 0.86 -0.8
5,567,217 - PP_4896 0.86 -2.1
5,567,512 + +0.8
5,567,512 + -2.2
5,567,630 - PP_4897 0.10 +0.5
5,567,630 - PP_4897 0.10 +0.0
5,567,630 - PP_4897 0.10 +0.5
5,567,687 + PP_4897 0.14 -0.5
5,567,687 + PP_4897 0.14 -1.7
5,567,687 + PP_4897 0.14 -0.9
5,567,688 - PP_4897 0.14 +2.8
5,567,688 - PP_4897 0.14 -0.9
5,567,688 - PP_4897 0.14 -0.2

Or see this region's nucleotide sequence