Strain Fitness in Pseudomonas putida KT2440 around PP_3546

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
4,018,361	+		PP_3545	0.48	-0.0
4,018,370	+		PP_3545	0.48	-2.2
4,018,402	+		PP_3545	0.50	+0.2
4,018,685	+		PP_3545	0.67	+0.3
4,018,760	+		PP_3545	0.72	+0.1
4,018,760	+		PP_3545	0.72	+0.3
4,018,761	-		PP_3545	0.72	-1.5
4,018,905	+		PP_3545	0.81	-0.8
4,018,905	+		PP_3545	0.81	-0.1
4,018,905	+		PP_3545	0.81	+0.4
4,018,905	+		PP_3545	0.81	-1.4
4,018,906	-		PP_3545	0.81	-0.6
4,018,911	+		PP_3545	0.81	+0.5
4,018,912	-		PP_3545	0.81	+0.5
4,018,912	-		PP_3545	0.81	-1.2
4,018,958	+		PP_3545	0.84	+0.1
4,018,958	+		PP_3545	0.84	-0.2
4,018,959	-		PP_3545	0.84	-0.1
4,018,959	-		PP_3545	0.84	-0.9
4,018,959	-		PP_3545	0.84	-0.1
4,018,959	-		PP_3545	0.84	+0.6
4,018,959	-		PP_3545	0.84	+0.5
4,018,959	-		PP_3545	0.84	+0.3
4,018,959	-		PP_3545	0.84	-0.2
4,018,959	-		PP_3545	0.84	+0.5
4,019,059	+				+1.8
4,019,059	+		PP_3545	0.90	-0.5
4,019,059	+		PP_3545	0.90	-0.6
4,019,060	-		PP_3545	0.90	-2.1
4,019,060	-		PP_3545	0.90	-0.6
4,019,060	-		PP_3545	0.90	-0.4
4,019,060	-		PP_3545	0.90	+0.3
4,019,060	-		PP_3545	0.90	+0.5
4,019,096	+				+0.3
4,019,097	-				-0.0
4,019,097	-				+0.3
4,019,113	+				-0.3
4,019,114	-				+0.5
4,019,256	+				-0.0
4,019,401	+				+1.1
4,019,482	+				+0.5
4,019,482	+				-0.1
4,019,482	+				-0.5
4,019,483	-				+0.2
4,019,483	-				-0.2
4,019,483	-				+0.2
4,019,483	-				-0.2
4,019,509	+		PP_3546	0.11	-1.1
4,019,509	+		PP_3546	0.11	+0.8
4,019,510	-		PP_3546	0.11	-0.4
4,019,687	+		PP_3546	0.19	-0.7
4,019,688	-		PP_3546	0.19	-2.0
4,019,711	+		PP_3546	0.20	-2.0
4,019,711	+		PP_3546	0.20	+0.1
4,019,844	+		PP_3546	0.27	-2.1
4,019,845	-		PP_3546	0.27	-1.0
4,019,927	+		PP_3546	0.31	-1.5
4,019,927	+		PP_3546	0.31	-0.1
4,019,929	+		PP_3546	0.31	-1.5
4,019,956	+		PP_3546	0.32	-0.3
4,019,957	-		PP_3546	0.32	-0.1
4,019,957	-		PP_3546	0.32	+0.0
4,020,085	+		PP_3546	0.38	+0.8
4,020,086	-		PP_3546	0.39	-1.8
4,020,128	+		PP_3546	0.41	+0.3
4,020,151	+		PP_3546	0.42	+0.1
4,020,151	+		PP_3546	0.42	-1.7
4,020,597	-		PP_3546	0.63	-2.7
4,020,597	-		PP_3546	0.63	+0.2
4,020,835	+		PP_3546	0.75	+0.2
4,020,835	+		PP_3546	0.75	+0.1
4,020,835	+		PP_3546	0.75	-1.2
4,020,835	+		PP_3546	0.75	-1.0
4,020,835	+		PP_3546	0.75	+0.3
4,020,836	-		PP_3546	0.75	-1.0
4,020,836	-		PP_3546	0.75	+0.3
4,021,284	+				+0.7
4,021,285	-				-0.2
4,021,285	-				+1.2
4,021,285	-				-0.2
4,021,285	-				+0.2
4,021,404	+				+0.2
4,021,404	+				+0.2
4,021,404	+				+1.0
4,021,543	+		PP_3547	0.19	-0.4
4,021,543	+		PP_3547	0.19	+0.2
4,021,543	+		PP_3547	0.19	-1.0
4,021,544	-		PP_3547	0.19	+0.2
4,021,545	+		PP_3547	0.19	+0.4
4,021,545	+		PP_3547	0.19	+0.8
4,021,545	+		PP_3547	0.19	-0.1
4,021,545	+		PP_3547	0.19	+1.8
4,021,545	+		PP_3547	0.19	+0.2
4,021,545	+		PP_3547	0.19	+0.0
4,021,546	-		PP_3547	0.19	-0.8
4,021,546	-		PP_3547	0.19	-1.1
4,021,556	+		PP_3547	0.20	-0.1
4,021,641	+		PP_3547	0.29	+0.2
4,021,641	+		PP_3547	0.29	+0.2
4,021,642	-		PP_3547	0.30	-0.4
4,021,650	+		PP_3547	0.30	+0.0
4,021,650	+		PP_3547	0.30	-0.2
4,021,650	+		PP_3547	0.30	+0.2
4,021,651	-		PP_3547	0.30	+0.1
4,021,688	+		PP_3547	0.34	+0.2
4,021,688	+		PP_3547	0.34	+0.7
4,021,689	-		PP_3547	0.35	+0.7
4,022,014	-		PP_3547	0.69	-0.6
4,022,014	-		PP_3547	0.69	+0.1
4,022,148	+		PP_3547	0.83	+0.7
4,022,148	+		PP_3547	0.83	+0.5
4,022,148	+		PP_3547	0.83	+0.3
4,022,148	+		PP_3547	0.83	-2.1