Strain Fitness in Pseudomonas putida KT2440 around PP_1105

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
1,261,792	+		PP_1104	0.24	+0.7
1,262,057	+		PP_1104	0.48	+0.9
1,262,102	+		PP_1104	0.52	+1.3
1,262,102	+		PP_1104	0.52	-1.2
1,262,103	-		PP_1104	0.52	+0.1
1,262,103	-		PP_1104	0.52	+0.6
1,262,103	-		PP_1104	0.52	+0.8
1,262,148	+		PP_1104	0.56	+1.0
1,262,148	+		PP_1104	0.56	-0.2
1,262,176	+		PP_1104	0.59	-1.6
1,262,177	-		PP_1104	0.59	-0.6
1,262,237	+		PP_1104	0.64	-1.8
1,262,237	+		PP_1104	0.64	-0.1
1,262,425	+		PP_1104	0.81	+0.4
1,262,425	+		PP_1104	0.81	-0.4
1,262,425	+		PP_1104	0.81	-0.1
1,262,425	+		PP_1104	0.81	+0.8
1,262,425	+		PP_1104	0.81	+2.7
1,262,426	-		PP_1104	0.81	+0.4
1,262,492	-				+0.4
1,262,536	-				+0.1
1,262,536	-				+0.1
1,262,537	+				+0.3
1,262,691	-				+0.2
1,262,696	+				-0.5
1,262,696	+				+0.8
1,262,696	+				+0.5
1,262,697	-				-0.3
1,262,697	-				+0.6
1,262,697	-				+0.8
1,262,697	-				-0.3
1,262,742	-				-0.3
1,262,758	-				-0.1
1,262,844	-				-2.2
1,262,998	+		PP_1105	0.15	-0.0
1,262,999	-		PP_1105	0.15	+0.1
1,263,067	+		PP_1105	0.19	+3.5
1,263,068	-		PP_1105	0.19	-0.1
1,263,112	+		PP_1105	0.22	+1.0
1,263,112	+		PP_1105	0.22	+0.2
1,263,194	-		PP_1105	0.27	+0.2
1,263,194	-		PP_1105	0.27	+2.2
1,263,410	-		PP_1105	0.40	+0.6
1,263,838	+		PP_1105	0.66	+0.5
1,263,838	+		PP_1105	0.66	-0.0
1,263,839	-		PP_1105	0.66	+1.6
1,263,864	+		PP_1105	0.67	+0.7
1,263,864	+		PP_1105	0.67	+1.0
1,263,864	+		PP_1105	0.67	+0.5
1,263,864	+		PP_1105	0.67	-0.5
1,263,865	-		PP_1105	0.67	-0.6
1,263,865	-		PP_1105	0.67	+0.4
1,263,865	-		PP_1105	0.67	+0.6
1,263,865	-		PP_1105	0.67	+0.7
1,263,865	-		PP_1105	0.67	-1.5
1,263,865	-		PP_1105	0.67	-0.1
1,263,874	+		PP_1105	0.68	+1.6
1,263,993	+		PP_1105	0.75	-0.4
1,263,993	+		PP_1105	0.75	+1.1
1,263,994	-		PP_1105	0.75	+0.1
1,263,994	-		PP_1105	0.75	+1.9
1,264,181	-		PP_1105	0.86	-1.9
1,264,181	-		PP_1105	0.86	+1.2
1,264,236	+		PP_1105	0.90	-0.4
1,264,237	-		PP_1105	0.90	-1.1
1,264,237	-		PP_1105	0.90	-0.3
1,264,328	-				-0.7
1,264,391	+				-1.4
1,264,392	-				+0.2
1,264,446	+				+0.2
1,264,492	-				-0.4
1,264,492	-				-0.4
1,264,502	+				-0.8
1,264,502	+				-0.7
1,264,502	+				+0.2
1,264,503	-				-0.4
1,264,672	-		PP_1106	0.26	-0.8
1,264,697	-		PP_1106	0.29	+0.2
1,264,697	-		PP_1106	0.29	+0.4
1,264,763	-		PP_1106	0.35	+0.6
1,264,905	+		PP_1106	0.49	-0.3
1,264,905	+		PP_1106	0.49	-0.3
1,264,906	-		PP_1106	0.49	-0.1
1,265,062	+		PP_1106	0.65	-2.1
1,265,062	+		PP_1106	0.65	+0.9
1,265,063	-		PP_1106	0.65	-1.5
1,265,081	+		PP_1106	0.67	-0.2
1,265,081	+		PP_1106	0.67	+0.8
1,265,088	+		PP_1106	0.67	+1.3
1,265,088	+		PP_1106	0.67	+0.0
1,265,089	-		PP_1106	0.67	+0.2
1,265,089	-		PP_1106	0.67	-0.3
1,265,089	-		PP_1106	0.67	+0.5
1,265,209	-		PP_1106	0.79	+0.2
1,265,283	+		PP_1106	0.87	+0.6
1,265,284	-		PP_1106	0.87	+1.5
1,265,365	-				+0.2
1,265,385	+				+2.3
1,265,385	+				+0.6