Strain Fitness in Pseudomonas putida KT2440 around PP_0418

Experiment: MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0417 and PP_0418 are separated by 132 nucleotidesPP_0418 and PP_0420 are separated by 367 nucleotidesPP_0420 and PP_0421 are separated by 9 nucleotides PP_0417: PP_0417 - Anthranilate synthase component 1, at 505,507 to 506,988 _0417 PP_0418: PP_0418 - Esterase EstP, at 507,121 to 509,010 _0418 PP_0420: PP_0420 - aminodeoxychorismate synthase / para-aminobenzoate synthase multi-enzyme complex, at 509,378 to 509,971 _0420 PP_0421: PP_0421 - Anthranilate phosphoribosyltransferase, at 509,981 to 511,030 _0421 Position (kb) 507 508 509 510Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2 3at 506.168 kb on - strand, within PP_0417at 506.202 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.212 kb on + strand, within PP_0417at 506.213 kb on - strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.232 kb on + strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.233 kb on - strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.326 kb on + strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.327 kb on - strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.328 kb on + strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.329 kb on - strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.332 kb on + strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.333 kb on - strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.387 kb on + strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.388 kb on - strand, within PP_0417at 506.606 kb on - strand, within PP_0417at 506.638 kb on - strand, within PP_0417at 506.774 kb on - strand, within PP_0417at 506.836 kb on - strand, within PP_0417at 506.986 kb on + strandat 506.987 kb on - strandat 507.035 kb on + strandat 507.035 kb on + strandat 507.036 kb on - strandat 507.060 kb on + strandat 507.060 kb on + strandat 507.060 kb on + strandat 507.061 kb on - strandat 507.061 kb on - strandat 507.147 kb on + strandat 507.147 kb on + strandat 507.147 kb on + strandat 507.148 kb on - strandat 507.148 kb on - strandat 507.151 kb on - strandat 507.151 kb on - strandat 507.188 kb on + strandat 507.189 kb on - strandat 507.189 kb on - strandat 507.267 kb on + strandat 507.267 kb on + strandat 507.268 kb on - strandat 507.268 kb on - strandat 507.268 kb on - strandat 507.268 kb on - strandat 507.485 kb on + strand, within PP_0418at 507.510 kb on - strand, within PP_0418at 507.510 kb on - strand, within PP_0418at 507.567 kb on - strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.741 kb on + strand, within PP_0418at 507.742 kb on - strand, within PP_0418at 507.742 kb on - strand, within PP_0418at 507.742 kb on - strand, within PP_0418at 507.742 kb on - strand, within PP_0418at 507.742 kb on - strand, within PP_0418at 507.743 kb on + strand, within PP_0418at 507.743 kb on + strand, within PP_0418at 507.743 kb on + strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.744 kb on - strand, within PP_0418at 507.758 kb on + strand, within PP_0418at 507.759 kb on - strand, within PP_0418at 507.842 kb on + strand, within PP_0418at 507.843 kb on - strand, within PP_0418at 507.984 kb on + strand, within PP_0418at 507.985 kb on - strand, within PP_0418at 507.985 kb on - strand, within PP_0418at 508.169 kb on + strand, within PP_0418at 508.169 kb on + strand, within PP_0418at 508.170 kb on - strand, within PP_0418at 508.170 kb on - strand, within PP_0418at 508.170 kb on - strand, within PP_0418at 508.191 kb on + strand, within PP_0418at 508.191 kb on + strand, within PP_0418at 508.192 kb on - strand, within PP_0418at 508.201 kb on - strand, within PP_0418at 508.203 kb on - strand, within PP_0418at 508.203 kb on - strand, within PP_0418at 508.417 kb on + strand, within PP_0418at 508.418 kb on - strand, within PP_0418at 508.436 kb on + strand, within PP_0418at 508.436 kb on + strand, within PP_0418at 508.436 kb on + strand, within PP_0418at 508.437 kb on - strand, within PP_0418at 508.437 kb on - strand, within PP_0418at 508.437 kb on - strand, within PP_0418at 508.513 kb on - strand, within PP_0418at 508.556 kb on + strand, within PP_0418at 508.559 kb on + strand, within PP_0418at 508.560 kb on - strand, within PP_0418at 508.560 kb on - strand, within PP_0418at 508.560 kb on - strand, within PP_0418at 508.719 kb on + strand, within PP_0418at 508.720 kb on - strand, within PP_0418at 508.720 kb on - strand, within PP_0418at 508.722 kb on + strand, within PP_0418at 508.723 kb on - strand, within PP_0418at 508.723 kb on - strand, within PP_0418at 508.737 kb on + strand, within PP_0418at 508.738 kb on - strand, within PP_0418at 508.741 kb on + strand, within PP_0418at 508.741 kb on + strand, within PP_0418at 508.741 kb on + strand, within PP_0418at 508.741 kb on + strand, within PP_0418at 508.742 kb on - strand, within PP_0418at 508.742 kb on - strand, within PP_0418at 508.929 kb on - strandat 509.036 kb on + strandat 509.108 kb on - strandat 509.108 kb on - strandat 509.115 kb on + strandat 509.115 kb on + strandat 509.115 kb on + strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.116 kb on - strandat 509.140 kb on + strandat 509.140 kb on + strandat 509.140 kb on + strandat 509.141 kb on - strandat 509.155 kb on + strandat 509.155 kb on + strandat 509.156 kb on - strandat 509.156 kb on - strandat 509.156 kb on - strandat 509.168 kb on + strandat 509.168 kb on + strandat 509.168 kb on + strandat 509.169 kb on - strandat 509.205 kb on + strandat 509.246 kb on + strandat 509.247 kb on - strandat 509.247 kb on - strandat 509.356 kb on + strandat 509.371 kb on + strandat 509.382 kb on + strandat 509.399 kb on + strandat 509.399 kb on + strandat 509.415 kb on - strandat 509.415 kb on - strandat 509.429 kb on + strandat 509.524 kb on - strand, within PP_0420at 509.524 kb on - strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.610 kb on + strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.611 kb on - strand, within PP_0420at 509.658 kb on + strand, within PP_0420at 509.659 kb on - strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.697 kb on + strand, within PP_0420at 509.699 kb on + strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.700 kb on - strand, within PP_0420at 509.731 kb on + strand, within PP_0420at 509.732 kb on - strand, within PP_0420at 509.772 kb on + strand, within PP_0420at 509.773 kb on - strand, within PP_0420

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Per-strain Table

Position Strand Gene LocusTag Fraction MOPS minimal media_Glucose20mM with Chloramphenicol 25 .g/mL
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506,168 - PP_0417 0.45 -2.3
506,202 + PP_0417 0.47 -3.8
506,212 + PP_0417 0.48 -6.0
506,212 + PP_0417 0.48 -2.9
506,212 + PP_0417 0.48 +0.1
506,212 + PP_0417 0.48 -2.5
506,212 + PP_0417 0.48 -5.1
506,213 - PP_0417 0.48 -6.5
506,232 + PP_0417 0.49 -1.0
506,232 + PP_0417 0.49 -5.3
506,232 + PP_0417 0.49 -3.1
506,233 - PP_0417 0.49 -2.6
506,233 - PP_0417 0.49 -1.4
506,233 - PP_0417 0.49 -4.8
506,233 - PP_0417 0.49 -3.6
506,233 - PP_0417 0.49 -4.7
506,233 - PP_0417 0.49 -0.1
506,233 - PP_0417 0.49 -0.9
506,233 - PP_0417 0.49 -2.4
506,326 + PP_0417 0.55 -0.9
506,326 + PP_0417 0.55 -1.6
506,326 + PP_0417 0.55 -3.9
506,326 + PP_0417 0.55 -1.4
506,326 + PP_0417 0.55 -1.4
506,326 + PP_0417 0.55 -2.7
506,326 + PP_0417 0.55 -2.6
506,326 + PP_0417 0.55 -0.5
506,327 - PP_0417 0.55 -0.7
506,327 - PP_0417 0.55 -3.0
506,327 - PP_0417 0.55 -5.9
506,327 - PP_0417 0.55 -4.9
506,327 - PP_0417 0.55 -1.2
506,327 - PP_0417 0.55 +1.5
506,327 - PP_0417 0.55 -3.4
506,327 - PP_0417 0.55 -1.9
506,327 - PP_0417 0.55 -4.8
506,327 - PP_0417 0.55 -4.7
506,327 - PP_0417 0.55 -1.1
506,327 - PP_0417 0.55 -2.1
506,327 - PP_0417 0.55 -1.3
506,327 - PP_0417 0.55 -1.4
506,327 - PP_0417 0.55 -2.5
506,327 - PP_0417 0.55 -1.3
506,327 - PP_0417 0.55 -2.8
506,327 - PP_0417 0.55 -5.8
506,328 + PP_0417 0.55 -2.4
506,328 + PP_0417 0.55 -2.3
506,328 + PP_0417 0.55 -2.0
506,328 + PP_0417 0.55 -1.3
506,328 + PP_0417 0.55 -2.3
506,328 + PP_0417 0.55 -2.9
506,328 + PP_0417 0.55 -2.6
506,329 - PP_0417 0.55 -2.9
506,329 - PP_0417 0.55 -2.9
506,329 - PP_0417 0.55 -2.6
506,329 - PP_0417 0.55 -4.1
506,329 - PP_0417 0.55 +0.9
506,329 - PP_0417 0.55 -1.8
506,329 - PP_0417 0.55 -0.9
506,329 - PP_0417 0.55 -4.6
506,329 - PP_0417 0.55 -5.0
506,329 - PP_0417 0.55 -1.2
506,329 - PP_0417 0.55 -3.1
506,329 - PP_0417 0.55 -2.0
506,329 - PP_0417 0.55 -2.9
506,329 - PP_0417 0.55 -4.7
506,329 - PP_0417 0.55 -2.1
506,329 - PP_0417 0.55 -3.6
506,329 - PP_0417 0.55 -2.0
506,329 - PP_0417 0.55 -1.3
506,332 + PP_0417 0.56 -5.2
506,332 + PP_0417 0.56 -3.8
506,332 + PP_0417 0.56 -4.3
506,333 - PP_0417 0.56 -3.2
506,333 - PP_0417 0.56 -2.4
506,333 - PP_0417 0.56 -2.8
506,333 - PP_0417 0.56 -2.9
506,333 - PP_0417 0.56 -2.5
506,333 - PP_0417 0.56 -0.3
506,387 + PP_0417 0.59 +0.5
506,387 + PP_0417 0.59 -4.5
506,387 + PP_0417 0.59 -0.9
506,387 + PP_0417 0.59 -0.5
506,388 - PP_0417 0.59 -1.2
506,388 - PP_0417 0.59 -1.2
506,388 - PP_0417 0.59 -3.4
506,388 - PP_0417 0.59 -3.4
506,606 - PP_0417 0.74 -2.1
506,638 - PP_0417 0.76 +2.5
506,774 - PP_0417 0.85 -2.8
506,836 - PP_0417 0.90 -5.6
506,986 + +2.0
506,987 - +0.1
507,035 + +0.8
507,035 + -1.2
507,036 - -0.4
507,060 + +0.6
507,060 + +1.9
507,060 + +0.4
507,061 - +0.1
507,061 - -1.6
507,147 + +0.0
507,147 + +0.2
507,147 + -2.1
507,148 - +0.0
507,148 - -0.2
507,151 - -1.9
507,151 - +0.8
507,188 + -0.6
507,189 - +0.2
507,189 - -0.5
507,267 + +1.1
507,267 + -0.6
507,268 - +2.7
507,268 - -0.9
507,268 - +1.3
507,268 - +0.1
507,485 + PP_0418 0.19 +0.7
507,510 - PP_0418 0.21 -1.2
507,510 - PP_0418 0.21 +0.3
507,567 - PP_0418 0.24 +0.0
507,741 + PP_0418 0.33 +0.2
507,741 + PP_0418 0.33 +0.8
507,741 + PP_0418 0.33 -0.8
507,741 + PP_0418 0.33 +0.1
507,741 + PP_0418 0.33 -0.6
507,741 + PP_0418 0.33 +0.2
507,741 + PP_0418 0.33 +0.3
507,741 + PP_0418 0.33 +0.9
507,741 + PP_0418 0.33 +0.8
507,742 - PP_0418 0.33 +1.3
507,742 - PP_0418 0.33 +0.6
507,742 - PP_0418 0.33 +1.5
507,742 - PP_0418 0.33 +0.9
507,742 - PP_0418 0.33 -0.9
507,743 + PP_0418 0.33 -0.7
507,743 + PP_0418 0.33 +0.5
507,743 + PP_0418 0.33 +0.3
507,744 - PP_0418 0.33 +0.1
507,744 - PP_0418 0.33 +0.4
507,744 - PP_0418 0.33 -0.3
507,744 - PP_0418 0.33 +0.1
507,744 - PP_0418 0.33 +0.7
507,744 - PP_0418 0.33 +0.6
507,744 - PP_0418 0.33 +0.3
507,744 - PP_0418 0.33 +1.4
507,758 + PP_0418 0.34 +0.2
507,759 - PP_0418 0.34 +2.0
507,842 + PP_0418 0.38 +0.1
507,843 - PP_0418 0.38 -0.2
507,984 + PP_0418 0.46 -0.9
507,985 - PP_0418 0.46 -0.2
507,985 - PP_0418 0.46 -0.2
508,169 + PP_0418 0.55 +1.1
508,169 + PP_0418 0.55 -1.8
508,170 - PP_0418 0.56 +0.2
508,170 - PP_0418 0.56 +0.9
508,170 - PP_0418 0.56 +0.2
508,191 + PP_0418 0.57 +0.2
508,191 + PP_0418 0.57 +1.4
508,192 - PP_0418 0.57 -0.7
508,201 - PP_0418 0.57 +1.1
508,203 - PP_0418 0.57 +0.1
508,203 - PP_0418 0.57 +0.1
508,417 + PP_0418 0.69 +0.1
508,418 - PP_0418 0.69 +1.8
508,436 + PP_0418 0.70 -1.5
508,436 + PP_0418 0.70 +0.8
508,436 + PP_0418 0.70 +0.4
508,437 - PP_0418 0.70 +0.2
508,437 - PP_0418 0.70 +0.9
508,437 - PP_0418 0.70 +1.3
508,513 - PP_0418 0.74 -0.1
508,556 + PP_0418 0.76 -0.3
508,559 + PP_0418 0.76 -0.4
508,560 - PP_0418 0.76 +0.8
508,560 - PP_0418 0.76 +0.8
508,560 - PP_0418 0.76 -0.5
508,719 + PP_0418 0.85 +0.1
508,720 - PP_0418 0.85 +1.3
508,720 - PP_0418 0.85 +1.3
508,722 + PP_0418 0.85 +0.6
508,723 - PP_0418 0.85 -0.1
508,723 - PP_0418 0.85 -1.7
508,737 + PP_0418 0.86 +3.0
508,738 - PP_0418 0.86 +0.3
508,741 + PP_0418 0.86 -0.1
508,741 + PP_0418 0.86 +0.5
508,741 + PP_0418 0.86 +0.2
508,741 + PP_0418 0.86 +1.0
508,742 - PP_0418 0.86 +0.5
508,742 - PP_0418 0.86 +1.7
508,929 - +0.1
509,036 + +1.1
509,108 - -0.4
509,108 - +1.5
509,115 + +0.0
509,115 + +0.6
509,115 + -0.2
509,116 - -0.2
509,116 - -1.7
509,116 - -0.2
509,116 - +0.9
509,140 + -1.1
509,140 + -1.4
509,140 + -0.9
509,141 - -0.9
509,155 + -0.6
509,155 + +1.5
509,156 - -1.6
509,156 - +1.5
509,156 - -3.4
509,168 + -0.3
509,168 + -0.9
509,168 + -0.0
509,169 - -5.8
509,205 + +1.3
509,246 + +0.0
509,247 - -1.7
509,247 - -2.1
509,356 + -0.4
509,371 + +0.3
509,382 + -1.9
509,399 + +0.5
509,399 + -3.7
509,415 - -2.6
509,415 - -2.0
509,429 + -1.8
509,524 - PP_0420 0.25 -0.3
509,524 - PP_0420 0.25 -1.9
509,610 + PP_0420 0.39 -1.8
509,610 + PP_0420 0.39 -5.4
509,610 + PP_0420 0.39 -4.1
509,610 + PP_0420 0.39 -4.0
509,610 + PP_0420 0.39 -2.1
509,610 + PP_0420 0.39 -0.1
509,611 - PP_0420 0.39 -2.8
509,611 - PP_0420 0.39 -2.0
509,611 - PP_0420 0.39 -5.7
509,611 - PP_0420 0.39 -6.3
509,611 - PP_0420 0.39 -2.8
509,611 - PP_0420 0.39 -0.9
509,611 - PP_0420 0.39 -2.4
509,611 - PP_0420 0.39 -3.0
509,611 - PP_0420 0.39 -4.5
509,658 + PP_0420 0.47 +0.1
509,659 - PP_0420 0.47 -2.2
509,697 + PP_0420 0.54 -2.2
509,697 + PP_0420 0.54 -5.7
509,697 + PP_0420 0.54 -5.0
509,699 + PP_0420 0.54 -1.9
509,700 - PP_0420 0.54 -2.9
509,700 - PP_0420 0.54 -1.2
509,700 - PP_0420 0.54 -4.8
509,700 - PP_0420 0.54 -2.5
509,700 - PP_0420 0.54 -2.7
509,700 - PP_0420 0.54 -0.9
509,731 + PP_0420 0.59 -1.7
509,732 - PP_0420 0.60 -0.1
509,772 + PP_0420 0.66 -2.1
509,773 - PP_0420 0.66 -2.2

Or see this region's nucleotide sequence