Strain Fitness in Pseudomonas putida KT2440 around PP_2703

Experiment: Hippuric (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_2702 and PP_2703 are separated by 373 nucleotidesPP_2703 and PP_2704 are separated by 1 nucleotides PP_2702: PP_2702 - putative Porin, at 3,092,955 to 3,094,085 _2702 PP_2703: PP_2703 - major facilitator transporter, at 3,094,459 to 3,095,760 _2703 PP_2704: PP_2704 - Peptidase, M20/M25/M40 family, at 3,095,762 to 3,096,946 _2704 Position (kb) 3094 3095 3096Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 3093.530 kb on - strand, within PP_2702at 3093.562 kb on + strand, within PP_2702at 3093.598 kb on + strand, within PP_2702at 3093.598 kb on + strand, within PP_2702at 3093.598 kb on + strand, within PP_2702at 3093.616 kb on + strand, within PP_2702at 3093.616 kb on + strand, within PP_2702at 3093.616 kb on + strand, within PP_2702at 3093.616 kb on + strand, within PP_2702at 3093.616 kb on + strand, within PP_2702at 3093.617 kb on - strand, within PP_2702at 3093.662 kb on - strand, within PP_2702at 3093.662 kb on - strand, within PP_2702at 3093.833 kb on - strand, within PP_2702at 3093.904 kb on + strand, within PP_2702at 3093.905 kb on - strand, within PP_2702at 3093.905 kb on - strand, within PP_2702at 3093.931 kb on + strand, within PP_2702at 3093.971 kb on - strand, within PP_2702at 3093.971 kb on - strand, within PP_2702at 3094.070 kb on + strandat 3094.071 kb on - strandat 3094.158 kb on + strandat 3094.158 kb on + strandat 3094.381 kb on - strandat 3094.399 kb on + strandat 3094.422 kb on - strandat 3094.576 kb on + strandat 3094.577 kb on - strandat 3094.591 kb on + strand, within PP_2703at 3094.607 kb on + strand, within PP_2703at 3094.607 kb on + strand, within PP_2703at 3094.910 kb on + strand, within PP_2703at 3094.911 kb on - strand, within PP_2703at 3094.981 kb on + strand, within PP_2703at 3095.107 kb on + strand, within PP_2703at 3095.108 kb on - strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.111 kb on + strand, within PP_2703at 3095.112 kb on - strand, within PP_2703at 3095.155 kb on - strand, within PP_2703at 3095.240 kb on - strand, within PP_2703at 3095.254 kb on + strand, within PP_2703at 3095.266 kb on + strand, within PP_2703at 3095.267 kb on - strand, within PP_2703at 3095.267 kb on - strand, within PP_2703at 3095.287 kb on + strand, within PP_2703at 3095.326 kb on - strand, within PP_2703at 3095.378 kb on - strand, within PP_2703at 3095.378 kb on - strand, within PP_2703at 3095.378 kb on - strand, within PP_2703at 3095.446 kb on + strand, within PP_2703at 3095.446 kb on + strand, within PP_2703at 3095.447 kb on - strand, within PP_2703at 3095.731 kb on + strandat 3095.761 kb on + strandat 3095.761 kb on + strandat 3095.762 kb on - strandat 3095.767 kb on + strandat 3095.875 kb on + strandat 3095.876 kb on - strandat 3095.876 kb on - strandat 3095.915 kb on + strand, within PP_2704at 3096.134 kb on - strand, within PP_2704at 3096.166 kb on - strand, within PP_2704at 3096.263 kb on - strand, within PP_2704at 3096.263 kb on - strand, within PP_2704at 3096.263 kb on - strand, within PP_2704at 3096.464 kb on + strand, within PP_2704at 3096.465 kb on - strand, within PP_2704at 3096.465 kb on - strand, within PP_2704at 3096.507 kb on - strand, within PP_2704at 3096.623 kb on + strand, within PP_2704

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Per-strain Table

Position Strand Gene LocusTag Fraction Hippuric (N)
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3,093,530 - PP_2702 0.51 -0.0
3,093,562 + PP_2702 0.54 -2.1
3,093,598 + PP_2702 0.57 +0.5
3,093,598 + PP_2702 0.57 -0.1
3,093,598 + PP_2702 0.57 -0.2
3,093,616 + PP_2702 0.58 -0.6
3,093,616 + PP_2702 0.58 -0.2
3,093,616 + PP_2702 0.58 -1.4
3,093,616 + PP_2702 0.58 -1.4
3,093,616 + PP_2702 0.58 +1.3
3,093,617 - PP_2702 0.59 -1.3
3,093,662 - PP_2702 0.63 +1.5
3,093,662 - PP_2702 0.63 +0.9
3,093,833 - PP_2702 0.78 -0.4
3,093,904 + PP_2702 0.84 +0.5
3,093,905 - PP_2702 0.84 -0.0
3,093,905 - PP_2702 0.84 +0.1
3,093,931 + PP_2702 0.86 -0.3
3,093,971 - PP_2702 0.90 -0.3
3,093,971 - PP_2702 0.90 -3.7
3,094,070 + -1.9
3,094,071 - +0.3
3,094,158 + -1.1
3,094,158 + -2.0
3,094,381 - -1.9
3,094,399 + -1.2
3,094,422 - -1.5
3,094,576 + -1.9
3,094,577 - -0.4
3,094,591 + PP_2703 0.10 -3.2
3,094,607 + PP_2703 0.11 -2.9
3,094,607 + PP_2703 0.11 -1.9
3,094,910 + PP_2703 0.35 -2.2
3,094,911 - PP_2703 0.35 -0.1
3,094,981 + PP_2703 0.40 -2.0
3,095,107 + PP_2703 0.50 -1.0
3,095,108 - PP_2703 0.50 -1.2
3,095,111 + PP_2703 0.50 -0.3
3,095,111 + PP_2703 0.50 -1.9
3,095,111 + PP_2703 0.50 -0.9
3,095,111 + PP_2703 0.50 -2.8
3,095,111 + PP_2703 0.50 -1.5
3,095,111 + PP_2703 0.50 -2.3
3,095,111 + PP_2703 0.50 -0.6
3,095,112 - PP_2703 0.50 -0.8
3,095,155 - PP_2703 0.53 -0.9
3,095,240 - PP_2703 0.60 -1.7
3,095,254 + PP_2703 0.61 -2.3
3,095,266 + PP_2703 0.62 -2.7
3,095,267 - PP_2703 0.62 -1.6
3,095,267 - PP_2703 0.62 -2.6
3,095,287 + PP_2703 0.64 -1.9
3,095,326 - PP_2703 0.67 -2.3
3,095,378 - PP_2703 0.71 -1.5
3,095,378 - PP_2703 0.71 -2.3
3,095,378 - PP_2703 0.71 -3.1
3,095,446 + PP_2703 0.76 -2.0
3,095,446 + PP_2703 0.76 -1.5
3,095,447 - PP_2703 0.76 -3.2
3,095,731 + -2.2
3,095,761 + -1.7
3,095,761 + -2.3
3,095,762 - -1.3
3,095,767 + -0.9
3,095,875 + -2.8
3,095,876 - -2.0
3,095,876 - -4.4
3,095,915 + PP_2704 0.13 -2.3
3,096,134 - PP_2704 0.31 -2.0
3,096,166 - PP_2704 0.34 -2.3
3,096,263 - PP_2704 0.42 -4.8
3,096,263 - PP_2704 0.42 -1.5
3,096,263 - PP_2704 0.42 -3.2
3,096,464 + PP_2704 0.59 -3.3
3,096,465 - PP_2704 0.59 -3.9
3,096,465 - PP_2704 0.59 -1.1
3,096,507 - PP_2704 0.63 -1.1
3,096,623 + PP_2704 0.73 -2.0

Or see this region's nucleotide sequence