Experiment: Propiolactam (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_3728 and PP_3729 overlap by 4 nucleotides PP_3729 and PP_3730 overlap by 4 nucleotides PP_3730 and PP_3731 are separated by 73 nucleotides
PP_3728: PP_3728 - Sensor histidine kinase/response regulator, at 4,253,875 to 4,256,127
_3728
PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906
_3729
PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619
_3730
PP_3731: PP_3731 - Transcriptional regulator, TetR family, at 4,257,693 to 4,258,337
_3731
Position (kb)
4256
4257 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 4255.154 kb on + strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.155 kb on - strand, within PP_3728 at 4255.199 kb on + strand, within PP_3728 at 4255.200 kb on - strand at 4255.272 kb on + strand, within PP_3728 at 4255.272 kb on + strand, within PP_3728 at 4255.421 kb on - strand, within PP_3728 at 4255.476 kb on + strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.623 kb on - strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.700 kb on + strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4255.782 kb on - strand, within PP_3728 at 4256.028 kb on - strand at 4256.161 kb on + strand at 4256.383 kb on + strand, within PP_3729 at 4256.383 kb on + strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.384 kb on - strand, within PP_3729 at 4256.485 kb on + strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.486 kb on - strand, within PP_3729 at 4256.497 kb on + strand, within PP_3729 at 4256.567 kb on - strand, within PP_3729 at 4256.615 kb on + strand, within PP_3729 at 4256.642 kb on - strand, within PP_3729 at 4256.932 kb on - strand at 4256.932 kb on - strand at 4257.325 kb on - strand at 4257.366 kb on + strand, within PP_3730 at 4257.533 kb on + strand at 4257.534 kb on - strand, within PP_3730 at 4257.558 kb on + strand at 4257.559 kb on - strand at 4257.559 kb on - strand at 4257.651 kb on + strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.652 kb on - strand at 4257.672 kb on + strand at 4257.673 kb on - strand at 4257.673 kb on - strand at 4257.906 kb on + strand, within PP_3731
Per-strain Table
Position Strand Gene LocusTag Fraction Propiolactam (N) remove 4,255,154 + PP_3728 0.57 +0.4 4,255,155 - PP_3728 0.57 -0.8 4,255,155 - PP_3728 0.57 +0.4 4,255,199 + PP_3728 0.59 +0.5 4,255,200 - +3.0 4,255,272 + PP_3728 0.62 +1.4 4,255,272 + PP_3728 0.62 -0.3 4,255,421 - PP_3728 0.69 +0.4 4,255,476 + PP_3728 0.71 +1.0 4,255,623 - PP_3728 0.78 -1.4 4,255,623 - PP_3728 0.78 +0.1 4,255,623 - PP_3728 0.78 -1.4 4,255,700 + PP_3728 0.81 +0.4 4,255,700 + PP_3728 0.81 -0.1 4,255,700 + PP_3728 0.81 +0.7 4,255,700 + PP_3728 0.81 -0.3 4,255,782 - PP_3728 0.85 +0.5 4,255,782 - PP_3728 0.85 +2.4 4,255,782 - PP_3728 0.85 +1.3 4,255,782 - PP_3728 0.85 +1.4 4,256,028 - +1.0 4,256,161 + -0.9 4,256,383 + PP_3729 0.33 -0.1 4,256,383 + PP_3729 0.33 -0.1 4,256,384 - PP_3729 0.33 +0.4 4,256,384 - PP_3729 0.33 -1.3 4,256,485 + PP_3729 0.46 -1.0 4,256,486 - PP_3729 0.46 +0.2 4,256,486 - PP_3729 0.46 -0.9 4,256,497 + PP_3729 0.48 +1.4 4,256,567 - PP_3729 0.57 -0.8 4,256,615 + PP_3729 0.63 +0.5 4,256,642 - PP_3729 0.66 -0.6 4,256,932 - -0.3 4,256,932 - -0.3 4,257,325 - +2.0 4,257,366 + PP_3730 0.65 -0.3 4,257,533 + +0.3 4,257,534 - PP_3730 0.88 +0.0 4,257,558 + -0.3 4,257,559 - -0.2 4,257,559 - -0.3 4,257,651 + -0.2 4,257,652 - +1.1 4,257,652 - +0.7 4,257,652 - -0.8 4,257,652 - -2.1 4,257,672 + -1.7 4,257,673 - +0.5 4,257,673 - -0.5 4,257,906 + PP_3731 0.33 +1.7
Or see this region's nucleotide sequence