Strain Fitness in Pseudomonas putida KT2440 around PP_3728

Experiment: Propiolactam (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3727 and PP_3728 are separated by 196 nucleotidesPP_3728 and PP_3729 overlap by 4 nucleotidesPP_3729 and PP_3730 overlap by 4 nucleotides PP_3727: PP_3727 - Amino-acid permease RocE, at 4,252,272 to 4,253,678 _3727 PP_3728: PP_3728 - Sensor histidine kinase/response regulator, at 4,253,875 to 4,256,127 _3728 PP_3729: PP_3729 - Periplasmic amino acid-binding protein-related protein, at 4,256,124 to 4,256,906 _3729 PP_3730: PP_3730 - Transcriptional regulatory protein AruR, at 4,256,903 to 4,257,619 _3730 Position (kb) 4253 4254 4255 4256 4257Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4252.924 kb on + strand, within PP_3727at 4252.924 kb on + strand, within PP_3727at 4252.924 kb on + strand, within PP_3727at 4252.924 kb on + strand, within PP_3727at 4252.924 kb on + strand, within PP_3727at 4252.925 kb on - strand, within PP_3727at 4252.925 kb on - strand, within PP_3727at 4252.925 kb on - strand, within PP_3727at 4253.036 kb on - strand, within PP_3727at 4253.036 kb on - strand, within PP_3727at 4253.218 kb on + strand, within PP_3727at 4253.358 kb on + strand, within PP_3727at 4253.358 kb on + strand, within PP_3727at 4253.383 kb on + strand, within PP_3727at 4253.383 kb on + strand, within PP_3727at 4253.422 kb on + strand, within PP_3727at 4253.422 kb on + strand, within PP_3727at 4253.422 kb on + strand, within PP_3727at 4253.423 kb on - strand, within PP_3727at 4253.500 kb on + strand, within PP_3727at 4253.500 kb on + strand, within PP_3727at 4253.501 kb on - strand, within PP_3727at 4253.525 kb on - strand, within PP_3727at 4253.525 kb on - strand, within PP_3727at 4253.525 kb on - strand, within PP_3727at 4253.565 kb on + strandat 4253.565 kb on + strandat 4253.565 kb on + strandat 4253.737 kb on - strandat 4253.749 kb on + strandat 4253.750 kb on - strandat 4253.764 kb on + strandat 4253.765 kb on - strandat 4253.765 kb on - strandat 4253.803 kb on + strandat 4253.804 kb on - strandat 4253.818 kb on + strandat 4253.818 kb on + strandat 4253.818 kb on + strandat 4253.818 kb on + strandat 4253.818 kb on + strandat 4253.819 kb on - strandat 4253.819 kb on - strandat 4253.831 kb on + strandat 4253.872 kb on - strandat 4253.917 kb on + strandat 4253.917 kb on + strandat 4253.918 kb on - strandat 4253.959 kb on + strandat 4253.959 kb on + strandat 4253.960 kb on - strandat 4254.242 kb on - strand, within PP_3728at 4254.292 kb on + strand, within PP_3728at 4254.303 kb on + strand, within PP_3728at 4254.304 kb on - strand, within PP_3728at 4254.393 kb on + strand, within PP_3728at 4254.393 kb on + strand, within PP_3728at 4254.394 kb on - strand, within PP_3728at 4254.514 kb on + strand, within PP_3728at 4254.708 kb on + strand, within PP_3728at 4254.905 kb on - strand, within PP_3728at 4254.980 kb on + strand, within PP_3728at 4254.981 kb on - strand, within PP_3728at 4254.981 kb on - strand, within PP_3728at 4255.154 kb on + strand, within PP_3728at 4255.155 kb on - strand, within PP_3728at 4255.155 kb on - strand, within PP_3728at 4255.199 kb on + strand, within PP_3728at 4255.200 kb on - strandat 4255.272 kb on + strand, within PP_3728at 4255.272 kb on + strand, within PP_3728at 4255.421 kb on - strand, within PP_3728at 4255.476 kb on + strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.623 kb on - strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.700 kb on + strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4255.782 kb on - strand, within PP_3728at 4256.028 kb on - strandat 4256.161 kb on + strandat 4256.383 kb on + strand, within PP_3729at 4256.383 kb on + strand, within PP_3729at 4256.384 kb on - strand, within PP_3729at 4256.384 kb on - strand, within PP_3729at 4256.485 kb on + strand, within PP_3729at 4256.486 kb on - strand, within PP_3729at 4256.486 kb on - strand, within PP_3729at 4256.497 kb on + strand, within PP_3729at 4256.567 kb on - strand, within PP_3729at 4256.615 kb on + strand, within PP_3729at 4256.642 kb on - strand, within PP_3729at 4256.932 kb on - strandat 4256.932 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Propiolactam (N)
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4,252,924 + PP_3727 0.46 -0.5
4,252,924 + PP_3727 0.46 +0.2
4,252,924 + PP_3727 0.46 +0.3
4,252,924 + PP_3727 0.46 -1.5
4,252,924 + PP_3727 0.46 -0.8
4,252,925 - PP_3727 0.46 +1.6
4,252,925 - PP_3727 0.46 +0.4
4,252,925 - PP_3727 0.46 -0.4
4,253,036 - PP_3727 0.54 -0.9
4,253,036 - PP_3727 0.54 +0.1
4,253,218 + PP_3727 0.67 -0.4
4,253,358 + PP_3727 0.77 +0.6
4,253,358 + PP_3727 0.77 -1.0
4,253,383 + PP_3727 0.79 +0.3
4,253,383 + PP_3727 0.79 -0.6
4,253,422 + PP_3727 0.82 +1.4
4,253,422 + PP_3727 0.82 -0.0
4,253,422 + PP_3727 0.82 +1.1
4,253,423 - PP_3727 0.82 +1.3
4,253,500 + PP_3727 0.87 +2.6
4,253,500 + PP_3727 0.87 -1.0
4,253,501 - PP_3727 0.87 -0.3
4,253,525 - PP_3727 0.89 -1.2
4,253,525 - PP_3727 0.89 +0.7
4,253,525 - PP_3727 0.89 -0.1
4,253,565 + -0.9
4,253,565 + -1.2
4,253,565 + +0.2
4,253,737 - +0.2
4,253,749 + +0.6
4,253,750 - +0.6
4,253,764 + -2.3
4,253,765 - -1.1
4,253,765 - -0.2
4,253,803 + -1.3
4,253,804 - -0.1
4,253,818 + -1.0
4,253,818 + -0.3
4,253,818 + +2.6
4,253,818 + -2.4
4,253,818 + -1.6
4,253,819 - +4.6
4,253,819 - -0.9
4,253,831 + -0.8
4,253,872 - -0.3
4,253,917 + -0.5
4,253,917 + -0.4
4,253,918 - +3.4
4,253,959 + +1.3
4,253,959 + -0.6
4,253,960 - -0.3
4,254,242 - PP_3728 0.16 +1.3
4,254,292 + PP_3728 0.19 +1.0
4,254,303 + PP_3728 0.19 -0.9
4,254,304 - PP_3728 0.19 -1.1
4,254,393 + PP_3728 0.23 +1.0
4,254,393 + PP_3728 0.23 +2.1
4,254,394 - PP_3728 0.23 +2.7
4,254,514 + PP_3728 0.28 -0.3
4,254,708 + PP_3728 0.37 +0.6
4,254,905 - PP_3728 0.46 -0.3
4,254,980 + PP_3728 0.49 +1.3
4,254,981 - PP_3728 0.49 -0.6
4,254,981 - PP_3728 0.49 +3.0
4,255,154 + PP_3728 0.57 +0.4
4,255,155 - PP_3728 0.57 -0.8
4,255,155 - PP_3728 0.57 +0.4
4,255,199 + PP_3728 0.59 +0.5
4,255,200 - +3.0
4,255,272 + PP_3728 0.62 +1.4
4,255,272 + PP_3728 0.62 -0.3
4,255,421 - PP_3728 0.69 +0.4
4,255,476 + PP_3728 0.71 +1.0
4,255,623 - PP_3728 0.78 -1.4
4,255,623 - PP_3728 0.78 +0.1
4,255,623 - PP_3728 0.78 -1.4
4,255,700 + PP_3728 0.81 +0.4
4,255,700 + PP_3728 0.81 -0.1
4,255,700 + PP_3728 0.81 +0.7
4,255,700 + PP_3728 0.81 -0.3
4,255,782 - PP_3728 0.85 +0.5
4,255,782 - PP_3728 0.85 +2.4
4,255,782 - PP_3728 0.85 +1.3
4,255,782 - PP_3728 0.85 +1.4
4,256,028 - +1.0
4,256,161 + -0.9
4,256,383 + PP_3729 0.33 -0.1
4,256,383 + PP_3729 0.33 -0.1
4,256,384 - PP_3729 0.33 +0.4
4,256,384 - PP_3729 0.33 -1.3
4,256,485 + PP_3729 0.46 -1.0
4,256,486 - PP_3729 0.46 +0.2
4,256,486 - PP_3729 0.46 -0.9
4,256,497 + PP_3729 0.48 +1.4
4,256,567 - PP_3729 0.57 -0.8
4,256,615 + PP_3729 0.63 +0.5
4,256,642 - PP_3729 0.66 -0.6
4,256,932 - -0.3
4,256,932 - -0.3

Or see this region's nucleotide sequence