Strain Fitness in Pseudomonas putida KT2440 around PP_2351

Experiment: D-2-Aminobutyric (N)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-2-Aminobutyric (N)
2,680,436	+				+1.3
2,680,436	+				-1.8
2,680,437	-				-0.3
2,680,437	-				-1.6
2,680,498	-		PP_2350	0.13	+2.7
2,680,566	+		PP_2350	0.21	-0.8
2,680,594	-		PP_2350	0.24	-0.6
2,680,722	+		PP_2350	0.39	+1.7
2,680,723	-		PP_2350	0.39	+0.4
2,680,723	-		PP_2350	0.39	+1.4
2,680,728	+		PP_2350	0.39	-0.7
2,680,729	-		PP_2350	0.39	-2.0
2,680,729	-		PP_2350	0.39	-0.8
2,680,729	-		PP_2350	0.39	+1.1
2,680,806	+		PP_2350	0.48	+0.3
2,680,818	+		PP_2350	0.50	-0.5
2,681,055	+		PP_2350	0.77	-0.1
2,681,056	-		PP_2350	0.77	+0.1
2,681,056	-		PP_2350	0.77	-0.2
2,681,233	+				-0.5
2,681,283	+				+2.3
2,681,283	+				-0.3
2,681,283	+				+1.0
2,681,283	+				+0.8
2,681,283	+				-0.8
2,681,284	-				-2.6
2,681,288	+				+1.3
2,681,289	-				-0.6
2,681,306	-				-1.6
2,681,314	+				+1.8
2,681,354	+				+0.3
2,681,355	-				+0.8
2,681,377	-				+1.7
2,681,377	-				-1.1
2,681,377	-				+0.4
2,681,387	-				+0.2
2,681,407	+				+2.0
2,681,408	-				-2.2
2,681,417	+				+0.1
2,681,441	+				+2.3
2,681,441	+				-2.1
2,681,441	+				-0.2
2,681,442	-				+2.5
2,681,453	+				+0.2
2,681,453	+				-2.2
2,681,453	+				-2.3
2,681,546	-				-3.0
2,681,597	+				-0.8
2,681,597	+				-0.3
2,681,655	-		PP_2351	0.12	-1.2
2,681,687	+		PP_2351	0.13	-2.1
2,681,687	+		PP_2351	0.13	-2.4
2,681,687	+		PP_2351	0.13	-3.3
2,681,688	-		PP_2351	0.13	-1.5
2,681,688	-		PP_2351	0.13	-0.3
2,681,693	+		PP_2351	0.14	-0.4
2,681,693	+		PP_2351	0.14	-3.5
2,681,694	-		PP_2351	0.14	-0.6
2,681,694	-		PP_2351	0.14	-1.3
2,681,777	+		PP_2351	0.18	+1.9
2,681,777	+		PP_2351	0.18	+0.9
2,681,777	+		PP_2351	0.18	-1.8
2,681,777	+		PP_2351	0.18	+1.4
2,681,777	+		PP_2351	0.18	-2.0
2,681,778	-		PP_2351	0.18	+0.5
2,681,778	-		PP_2351	0.18	-1.0
2,681,778	-		PP_2351	0.18	-1.8
2,681,778	-		PP_2351	0.18	-1.6
2,682,137	+		PP_2351	0.37	+0.4
2,682,137	+		PP_2351	0.37	-1.0
2,682,137	+		PP_2351	0.37	-1.7
2,682,138	-		PP_2351	0.37	-2.1
2,682,146	+		PP_2351	0.38	-2.9
2,682,146	+		PP_2351	0.38	+0.9
2,682,146	+		PP_2351	0.38	-3.4
2,682,146	+		PP_2351	0.38	+1.4
2,682,146	+		PP_2351	0.38	+1.2
2,682,146	+		PP_2351	0.38	+0.6
2,682,146	+		PP_2351	0.38	+1.3
2,682,146	+		PP_2351	0.38	+0.7
2,682,146	+		PP_2351	0.38	+4.2
2,682,146	+		PP_2351	0.38	-1.3
2,682,146	+		PP_2351	0.38	+0.6
2,682,147	-		PP_2351	0.38	-1.2
2,682,147	-		PP_2351	0.38	-0.0
2,682,147	-		PP_2351	0.38	+0.3
2,682,147	-		PP_2351	0.38	-1.5
2,682,147	-		PP_2351	0.38	+0.3
2,682,147	-		PP_2351	0.38	+0.4
2,682,147	-		PP_2351	0.38	-0.2
2,682,147	-		PP_2351	0.38	-0.1
2,682,147	-		PP_2351	0.38	+0.1
2,682,147	-		PP_2351	0.38	-0.3
2,682,148	+		PP_2351	0.38	-0.8
2,682,148	+		PP_2351	0.38	-1.9
2,682,148	+		PP_2351	0.38	-1.0
2,682,148	+		PP_2351	0.38	-1.1
2,682,232	+		PP_2351	0.42	-1.3
2,682,232	+		PP_2351	0.42	-1.4
2,682,232	+		PP_2351	0.42	+1.3
2,682,232	+		PP_2351	0.42	-0.3
2,682,232	+		PP_2351	0.42	-1.4
2,682,232	+		PP_2351	0.42	-0.5
2,682,233	-		PP_2351	0.42	+0.2
2,682,233	-		PP_2351	0.42	-0.9
2,682,233	-		PP_2351	0.42	+0.7
2,682,236	+		PP_2351	0.42	-0.3
2,682,236	+		PP_2351	0.42	+1.4
2,682,236	+		PP_2351	0.42	+1.6
2,682,236	+		PP_2351	0.42	+0.8
2,682,236	+		PP_2351	0.42	-1.1
2,682,236	+		PP_2351	0.42	-0.4
2,682,237	-		PP_2351	0.42	-0.4
2,682,237	-		PP_2351	0.42	-0.3
2,682,237	-		PP_2351	0.42	+0.1
2,682,237	-		PP_2351	0.42	+0.4
2,682,311	+		PP_2351	0.46	-0.9
2,682,347	+		PP_2351	0.48	-1.0
2,682,347	+		PP_2351	0.48	+1.6
2,682,347	+		PP_2351	0.48	-1.3
2,682,348	-		PP_2351	0.48	+1.3
2,682,386	+		PP_2351	0.50	+0.7
2,682,436	+		PP_2351	0.53	-2.0
2,682,695	+		PP_2351	0.67	-0.1
2,682,696	-		PP_2351	0.67	+0.6
2,682,819	-		PP_2351	0.73	-1.3
2,682,831	-		PP_2351	0.74	+0.9
2,682,854	+		PP_2351	0.75	-1.3
2,682,855	-		PP_2351	0.75	-0.1
2,682,855	-		PP_2351	0.75	+0.7
2,682,855	-		PP_2351	0.75	-0.3
2,682,855	-		PP_2351	0.75	-2.4
2,682,899	+		PP_2351	0.77	+0.6
2,682,899	+		PP_2351	0.77	-0.5
2,683,042	-		PP_2351	0.85	-2.2
2,683,060	-		PP_2351	0.86	-2.2
2,683,241	+				-1.5
2,683,241	+				-2.9
2,683,242	-				+2.5
2,683,242	-				-1.4
2,683,242	-				+0.3
2,683,242	-				+0.1
2,683,242	-				-1.4
2,683,242	-				+0.7
2,683,242	-				-1.3
2,683,392	-				+0.2
2,683,529	+				+0.9
2,683,529	+				-1.5
2,683,534	-				-1.5
2,683,561	+		PP_2352	0.11	-1.3
2,683,561	+		PP_2352	0.11	-1.0
2,683,561	+		PP_2352	0.11	+0.1
2,683,561	+		PP_2352	0.11	+1.0
2,683,562	-		PP_2352	0.11	+2.5
2,683,562	-		PP_2352	0.11	+0.8
2,683,651	+		PP_2352	0.19	-1.0
2,683,651	+		PP_2352	0.19	-1.0
2,683,672	+		PP_2352	0.21	-1.1
2,683,672	+		PP_2352	0.21	-2.8
2,683,672	+		PP_2352	0.21	+1.1
2,683,776	+		PP_2352	0.30	+0.4
2,683,840	+		PP_2352	0.36	-1.2
2,683,840	+		PP_2352	0.36	-0.7
2,683,840	+		PP_2352	0.36	+0.4
2,683,840	+		PP_2352	0.36	+0.5
2,683,840	+		PP_2352	0.36	+1.9
2,683,841	-		PP_2352	0.36	+1.2
2,683,841	-		PP_2352	0.36	+0.1
2,683,841	-		PP_2352	0.36	-0.5
2,683,841	-		PP_2352	0.36	-1.4
2,683,841	-		PP_2352	0.36	-0.1
2,683,841	-				+1.7
2,683,841	-		PP_2352	0.36	-2.1
2,683,853	+		PP_2352	0.37	+0.3
2,684,007	-		PP_2352	0.51	+0.3
2,684,023	+		PP_2352	0.52	-0.6
2,684,024	-		PP_2352	0.52	-0.5
2,684,024	-		PP_2352	0.52	-1.8
2,684,080	-		PP_2352	0.57	-2.7
2,684,080	-		PP_2352	0.57	-1.3
2,684,299	+		PP_2352	0.76	+0.1
2,684,300	-		PP_2352	0.77	+1.2
2,684,306	-		PP_2352	0.77	+0.3