Experiment: D-2-Aminobutyric (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0203 and PP_t74 are separated by 162 nucleotides PP_t74 and PP_0204 are separated by 213 nucleotides PP_0204 and PP_0205 overlap by 4 nucleotides
PP_0203: PP_0203 - putative dipeptidase, at 253,386 to 255,116
_0203
PP_t74: PP_t74 - tRNA-Arg, at 255,279 to 255,355
_t74
PP_0204: PP_0204 - Transcriptional regulator, GntR family, at 255,569 to 256,318
_0204
PP_0205: PP_0205 - putative Oxidoreductase, at 256,315 to 258,039
_0205
Position (kb) 255
256
257 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 254.657 kb on - strand, within PP_0203 at 254.657 kb on - strand, within PP_0203 at 254.750 kb on - strand, within PP_0203 at 254.824 kb on + strand, within PP_0203 at 254.824 kb on + strand, within PP_0203 at 254.838 kb on - strand, within PP_0203 at 254.839 kb on + strand, within PP_0203 at 254.840 kb on - strand, within PP_0203 at 254.903 kb on - strand, within PP_0203 at 254.903 kb on - strand, within PP_0203 at 255.059 kb on + strand at 255.060 kb on - strand at 255.060 kb on - strand at 255.278 kb on - strand at 255.278 kb on - strand at 255.372 kb on - strand at 255.477 kb on - strand at 255.507 kb on + strand at 255.517 kb on - strand at 255.517 kb on - strand at 255.539 kb on + strand at 255.598 kb on - strand at 255.605 kb on + strand at 255.605 kb on + strand at 255.605 kb on + strand at 255.606 kb on - strand at 255.606 kb on - strand at 255.607 kb on + strand at 255.628 kb on - strand at 255.649 kb on + strand, within PP_0204 at 255.653 kb on + strand, within PP_0204 at 255.654 kb on - strand, within PP_0204 at 255.654 kb on - strand, within PP_0204 at 255.654 kb on - strand, within PP_0204 at 255.664 kb on + strand, within PP_0204 at 255.665 kb on - strand, within PP_0204 at 255.665 kb on - strand, within PP_0204 at 255.823 kb on + strand, within PP_0204 at 255.946 kb on + strand, within PP_0204 at 255.947 kb on - strand, within PP_0204 at 255.947 kb on - strand, within PP_0204 at 256.253 kb on + strand at 256.253 kb on + strand at 256.254 kb on - strand at 256.254 kb on - strand at 256.272 kb on + strand at 256.336 kb on + strand at 256.337 kb on - strand at 256.337 kb on - strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.461 kb on + strand at 256.462 kb on - strand at 256.462 kb on - strand at 256.464 kb on + strand at 256.464 kb on + strand at 256.464 kb on + strand at 256.465 kb on - strand at 256.523 kb on - strand, within PP_0205 at 256.523 kb on - strand, within PP_0205 at 256.582 kb on + strand, within PP_0205 at 256.582 kb on + strand, within PP_0205 at 256.582 kb on + strand, within PP_0205 at 256.583 kb on - strand, within PP_0205 at 256.583 kb on - strand, within PP_0205 at 256.739 kb on - strand, within PP_0205 at 256.739 kb on - strand, within PP_0205 at 256.934 kb on - strand, within PP_0205 at 256.978 kb on + strand, within PP_0205 at 256.979 kb on - strand, within PP_0205 at 256.991 kb on - strand, within PP_0205 at 256.991 kb on - strand, within PP_0205 at 257.053 kb on + strand, within PP_0205 at 257.074 kb on + strand, within PP_0205 at 257.074 kb on + strand, within PP_0205 at 257.074 kb on + strand, within PP_0205 at 257.074 kb on + strand, within PP_0205 at 257.099 kb on - strand, within PP_0205 at 257.141 kb on - strand, within PP_0205
Per-strain Table
Position Strand Gene LocusTag Fraction D-2-Aminobutyric (N) remove 254,657 - PP_0203 0.73 +0.1 254,657 - PP_0203 0.73 -0.4 254,750 - PP_0203 0.79 +0.6 254,824 + PP_0203 0.83 -0.2 254,824 + PP_0203 0.83 -0.2 254,838 - PP_0203 0.84 -2.6 254,839 + PP_0203 0.84 -1.9 254,840 - PP_0203 0.84 -0.2 254,903 - PP_0203 0.88 -0.2 254,903 - PP_0203 0.88 -1.1 255,059 + -1.0 255,060 - -0.6 255,060 - -1.0 255,278 - -0.5 255,278 - +2.7 255,372 - +0.4 255,477 - +0.9 255,507 + -1.0 255,517 - -2.1 255,517 - +0.7 255,539 + +1.5 255,598 - -1.1 255,605 + +1.4 255,605 + -1.0 255,605 + +1.3 255,606 - -1.8 255,606 - +3.8 255,607 + +1.4 255,628 - +0.5 255,649 + PP_0204 0.11 +1.5 255,653 + PP_0204 0.11 -1.1 255,654 - PP_0204 0.11 -1.0 255,654 - PP_0204 0.11 -0.2 255,654 - PP_0204 0.11 -2.0 255,664 + PP_0204 0.13 -2.4 255,665 - PP_0204 0.13 -0.8 255,665 - PP_0204 0.13 -1.0 255,823 + PP_0204 0.34 -2.1 255,946 + PP_0204 0.50 -1.7 255,947 - PP_0204 0.50 -0.9 255,947 - PP_0204 0.50 +1.1 256,253 + +2.0 256,253 + -2.4 256,254 - -0.3 256,254 - -0.3 256,272 + -0.1 256,336 + +3.6 256,337 - +2.7 256,337 - -0.8 256,461 + -1.2 256,461 + -1.3 256,461 + -1.4 256,461 + -0.4 256,461 + +1.1 256,461 + -1.2 256,461 + +0.9 256,461 + -2.2 256,461 + -0.6 256,462 - -1.1 256,462 - -0.8 256,464 + +2.4 256,464 + +1.5 256,464 + -0.4 256,465 - -1.6 256,523 - PP_0205 0.12 -0.1 256,523 - PP_0205 0.12 +3.0 256,582 + PP_0205 0.15 -0.4 256,582 + PP_0205 0.15 -0.1 256,582 + PP_0205 0.15 -0.8 256,583 - PP_0205 0.16 -1.5 256,583 - PP_0205 0.16 -0.1 256,739 - PP_0205 0.25 -1.6 256,739 - PP_0205 0.25 -0.2 256,934 - PP_0205 0.36 -0.5 256,978 + PP_0205 0.38 -1.0 256,979 - PP_0205 0.38 +0.7 256,991 - PP_0205 0.39 +1.7 256,991 - PP_0205 0.39 +0.5 257,053 + PP_0205 0.43 +0.7 257,074 + PP_0205 0.44 -0.6 257,074 + PP_0205 0.44 +1.6 257,074 + PP_0205 0.44 +1.2 257,074 + PP_0205 0.44 -0.3 257,099 - PP_0205 0.45 -2.7 257,141 - PP_0205 0.48 -1.2
Or see this region's nucleotide sequence