Strain Fitness in Pseudomonas putida KT2440 around PP_5508

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,592,299	+		PP_2270	0.34	-0.2
2,592,379	+		PP_2270	0.39	+0.3
2,592,395	+		PP_2270	0.41	-0.5
2,592,395	+		PP_2270	0.41	+0.1
2,592,396	-		PP_2270	0.41	-0.7
2,592,396	-		PP_2270	0.41	+0.8
2,592,396	-		PP_2270	0.41	-1.3
2,592,497	-		PP_2270	0.48	-0.4
2,592,525	+		PP_2270	0.50	-0.3
2,592,525	+		PP_2270	0.50	+0.2
2,592,525	+		PP_2270	0.50	-1.3
2,592,526	-		PP_2270	0.50	+0.7
2,592,596	+		PP_2270	0.54	+0.4
2,592,596	+		PP_2270	0.54	+0.8
2,592,596	+		PP_2270	0.54	-0.3
2,592,596	+		PP_2270	0.54	-0.5
2,592,597	-		PP_2270	0.54	+0.3
2,592,597	-		PP_2270	0.54	-0.2
2,592,725	+		PP_2270	0.63	+0.9
2,592,725	+		PP_2270	0.63	+0.8
2,592,725	+		PP_2270	0.63	-0.3
2,592,755	-		PP_2270	0.65	-0.4
2,592,805	+		PP_2270	0.69	-1.9
2,592,805	+		PP_2270	0.69	+0.1
2,592,805	+		PP_2270	0.69	+0.2
2,592,806	-		PP_2270	0.69	-0.1
2,592,806	-		PP_2270	0.69	+0.2
2,592,834	+		PP_2270	0.71	+0.4
2,592,834	+		PP_2270	0.71	+0.5
2,592,834	+		PP_2270	0.71	-1.2
2,592,834	+		PP_2270	0.71	+0.2
2,592,834	+		PP_2270	0.71	-0.7
2,592,834	+		PP_2270	0.71	+1.1
2,592,835	-		PP_2270	0.71	+0.1
2,592,835	-		PP_2270	0.71	-0.4
2,592,838	+		PP_2270	0.71	+0.8
2,592,838	+		PP_2270	0.71	+0.9
2,592,839	-				+0.4
2,592,839	-		PP_2270	0.71	-1.0
2,592,839	-		PP_2270	0.71	+0.4
2,592,839	-		PP_2270	0.71	+0.0
2,592,839	-		PP_2270	0.71	+0.3
2,592,939	-		PP_2270	0.78	-0.3
2,593,051	+		PP_2270	0.86	+1.9
2,593,051	+		PP_2270	0.86	+0.1
2,593,051	+		PP_2270	0.86	-0.2
2,593,052	-		PP_2270	0.86	+1.1
2,593,052	-		PP_2270	0.86	+0.2
2,593,138	+				-0.5
2,593,139	-				-0.1
2,593,168	+				+2.0
2,593,169	-				+0.6
2,593,169	-				+1.4
2,593,169	-				+0.1
2,593,169	-				-1.8
2,593,178	-				+0.8
2,593,237	-				+0.3
2,593,265	+				+0.3
2,593,266	-				+0.6
2,593,434	-		PP_5508	0.71	+1.0
2,593,569	+		PP_5509	0.16	+0.1
2,593,570	-		PP_5509	0.16	-0.4
2,593,757	+		PP_5509	0.62	+0.1
2,593,824	+		PP_5509	0.78	+0.3
2,593,825	-		PP_5509	0.78	-1.6
2,593,825	-		PP_5509	0.78	-0.4
2,593,845	+		PP_5509	0.83	+0.1
2,593,846	-		PP_5509	0.83	-2.3
2,593,866	+		PP_5509	0.88	-0.7
2,593,866	+		PP_5509	0.88	+0.2
2,593,866	+		PP_5509	0.88	-0.4
2,593,866	+		PP_5509	0.88	+1.1
2,593,867	-		PP_5509	0.89	+1.0
2,593,867	-		PP_5509	0.89	+0.1
2,593,872	+		PP_5509	0.90	-0.9
2,593,873	-				-0.1
2,593,873	-				+0.0
2,593,908	-				+0.2
2,593,911	+				+0.9
2,593,911	+				+1.2
2,593,911	+				-0.3
2,593,912	-				-1.3
2,593,912	-				-0.6
2,593,912	-				+0.0
2,594,076	+		PP_5510	0.82	+0.1
2,594,109	+				-0.3
2,594,109	+				+0.9
2,594,109	+				+0.5
2,594,110	-				-0.8
2,594,110	-				+0.6
2,594,187	+				+0.5
2,594,188	-				+0.3
2,594,188	-				+0.0
2,594,226	+				+0.2
2,594,226	+				+0.1
2,594,334	+				+0.6
2,594,335	-				-0.3
2,594,363	+				+0.2
2,594,363	+				+0.5
2,594,363	+				+1.2
2,594,364	-				+0.5
2,594,364	-				+0.6
2,594,364	-				+0.1
2,594,366	+				+0.0
2,594,367	-				-0.1
2,594,367	-				-0.4
2,594,367	-				+0.2