Strain Fitness in Pseudomonas putida KT2440 around PP_5445

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
466,067	+		PP_0385	0.12	+0.7
466,149	+		PP_0385	0.27	-0.4
466,149	+		PP_0385	0.27	+0.2
466,218	+		PP_0385	0.39	+0.1
466,299	+		PP_0385	0.54	+0.1
466,300	-		PP_0385	0.54	+0.5
466,374	+		PP_0385	0.68	+1.0
466,375	-		PP_0385	0.68	-0.2
466,456	+		PP_0385	0.82	+0.2
466,457	-		PP_0385	0.83	+0.5
466,512	+				-1.1
466,564	+				-1.1
466,565	-				-1.0
466,565	-				+0.3
466,616	+				-0.6
466,616	+				-1.7
466,688	-				+0.3
466,728	-				+0.2
466,756	+				-1.0
466,865	+				+0.3
466,865	+				-1.0
466,903	+				-1.2
466,904	-				-0.5
466,904	-				+0.8
466,922	+		PP_5445	0.15	-0.8
466,923	-		PP_5445	0.15	-1.0
467,006	-		PP_5445	0.64	-2.0
467,051	+				+0.1
467,051	+				+0.3
467,052	-				+0.0
467,070	-				-0.5
467,202	-				-1.9
467,202	-				-0.1
467,215	-				+0.8
467,215	-				-0.1
467,217	-				-0.1
467,262	-				-0.2
467,262	-				+0.4
467,262	-				+0.6
467,317	-				+1.2
467,317	-				-1.0
467,317	-				+0.5
467,520	+				+0.1
467,521	-				+0.3
467,521	-				+0.2
467,567	+				+0.6
467,589	+		PP_0386	0.10	-1.0
467,589	+		PP_0386	0.10	-1.1
467,590	-		PP_0386	0.10	-1.2
467,766	+		PP_0386	0.15	-0.1
467,766	+		PP_0386	0.15	-0.5
467,767	-		PP_0386	0.15	+1.6
467,810	+		PP_0386	0.16	-0.1