Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5086 and PP_5087 are separated by 56 nucleotides PP_5087 and PP_5088 are separated by 80 nucleotides
PP_5086: PP_5086 - putative nuclease (SNase domain protein), at 5,809,466 to 5,810,233
_5086
PP_5087: PP_5087 - ribosomal protein L31, at 5,810,290 to 5,810,592
_5087
PP_5088: PP_5088 - primosome assembly protein, at 5,810,673 to 5,812,892
_5088
Position (kb)
5810
5811 Strain fitness (log2 ratio)
-2
-1
0
1 at 5809.307 kb on + strand at 5809.307 kb on + strand at 5809.307 kb on + strand at 5809.307 kb on + strand at 5809.307 kb on + strand at 5809.308 kb on - strand at 5809.308 kb on - strand at 5809.308 kb on - strand at 5809.308 kb on - strand at 5809.333 kb on - strand at 5809.386 kb on + strand at 5809.391 kb on + strand at 5809.400 kb on - strand at 5809.400 kb on - strand at 5809.420 kb on + strand at 5809.420 kb on + strand at 5809.421 kb on - strand at 5809.702 kb on + strand, within PP_5086 at 5809.711 kb on + strand, within PP_5086 at 5809.763 kb on + strand, within PP_5086 at 5809.841 kb on + strand, within PP_5086 at 5809.841 kb on + strand, within PP_5086 at 5809.841 kb on + strand, within PP_5086 at 5809.841 kb on + strand, within PP_5086 at 5809.842 kb on - strand, within PP_5086 at 5809.846 kb on + strand, within PP_5086 at 5809.846 kb on + strand, within PP_5086 at 5809.847 kb on - strand, within PP_5086 at 5809.883 kb on - strand, within PP_5086 at 5809.920 kb on + strand, within PP_5086 at 5809.920 kb on + strand, within PP_5086 at 5809.920 kb on + strand, within PP_5086 at 5809.921 kb on - strand, within PP_5086 at 5809.921 kb on - strand, within PP_5086 at 5809.921 kb on - strand, within PP_5086 at 5809.944 kb on + strand, within PP_5086 at 5809.944 kb on + strand, within PP_5086 at 5809.944 kb on + strand, within PP_5086 at 5809.944 kb on + strand, within PP_5086 at 5809.945 kb on - strand, within PP_5086 at 5809.945 kb on - strand, within PP_5086 at 5809.945 kb on - strand, within PP_5086 at 5809.945 kb on - strand, within PP_5086 at 5809.945 kb on - strand, within PP_5086 at 5809.954 kb on + strand, within PP_5086 at 5810.037 kb on + strand, within PP_5086 at 5810.050 kb on + strand, within PP_5086 at 5810.051 kb on - strand, within PP_5086 at 5810.051 kb on - strand, within PP_5086 at 5810.633 kb on - strand at 5810.651 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 5,809,307 + +0.8 5,809,307 + -1.9 5,809,307 + +0.9 5,809,307 + -1.6 5,809,307 + -0.1 5,809,308 - +0.3 5,809,308 - -1.3 5,809,308 - -1.3 5,809,308 - +0.3 5,809,333 - -0.3 5,809,386 + -0.3 5,809,391 + -0.1 5,809,400 - +0.7 5,809,400 - -0.8 5,809,420 + +0.3 5,809,420 + -0.4 5,809,421 - +1.0 5,809,702 + PP_5086 0.31 +1.1 5,809,711 + PP_5086 0.32 -0.7 5,809,763 + PP_5086 0.39 -0.0 5,809,841 + PP_5086 0.49 -0.8 5,809,841 + PP_5086 0.49 +0.5 5,809,841 + PP_5086 0.49 +0.5 5,809,841 + PP_5086 0.49 +0.6 5,809,842 - PP_5086 0.49 -0.2 5,809,846 + PP_5086 0.49 -0.5 5,809,846 + PP_5086 0.49 +0.2 5,809,847 - PP_5086 0.50 +1.4 5,809,883 - PP_5086 0.54 -0.5 5,809,920 + PP_5086 0.59 -0.5 5,809,920 + PP_5086 0.59 -0.4 5,809,920 + PP_5086 0.59 -1.7 5,809,921 - PP_5086 0.59 +0.0 5,809,921 - PP_5086 0.59 -1.1 5,809,921 - PP_5086 0.59 -1.7 5,809,944 + PP_5086 0.62 +0.7 5,809,944 + PP_5086 0.62 +0.2 5,809,944 + PP_5086 0.62 -0.0 5,809,944 + PP_5086 0.62 -0.0 5,809,945 - PP_5086 0.62 -0.1 5,809,945 - PP_5086 0.62 +0.8 5,809,945 - PP_5086 0.62 -1.1 5,809,945 - PP_5086 0.62 +0.6 5,809,945 - PP_5086 0.62 -0.2 5,809,954 + PP_5086 0.64 +0.4 5,810,037 + PP_5086 0.74 +0.9 5,810,050 + PP_5086 0.76 +0.2 5,810,051 - PP_5086 0.76 +0.9 5,810,051 - PP_5086 0.76 +0.4 5,810,633 - -0.4 5,810,651 - -0.7
Or see this region's nucleotide sequence