Strain Fitness in Pseudomonas putida KT2440 around PP_4910

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,579,966	+		PP_4909	0.28	+0.6
5,579,966	+		PP_4909	0.28	-0.3
5,579,966	+		PP_4909	0.28	+0.5
5,579,966	+		PP_4909	0.28	-0.3
5,579,967	-		PP_4909	0.28	-0.8
5,579,967	-		PP_4909	0.28	+0.3
5,579,967	-		PP_4909	0.28	+0.0
5,579,967	-		PP_4909	0.28	+0.7
5,579,970	+		PP_4909	0.28	-0.7
5,579,999	+		PP_4909	0.31	-1.2
5,580,000	-		PP_4909	0.31	+1.0
5,580,000	-		PP_4909	0.31	+0.7
5,580,467	+		PP_4909	0.68	+0.2
5,580,538	-		PP_4909	0.74	-0.4
5,580,576	-		PP_4909	0.77	+0.7
5,580,576	-		PP_4909	0.77	-1.0
5,580,600	-		PP_4909	0.79	+0.5
5,580,738	+		PP_4909	0.90	-0.3
5,580,867	+				+0.9
5,580,951	+				-0.3
5,580,951	+				+0.2
5,581,857	+		PP_4910	0.61	+0.5
5,581,857	+		PP_4910	0.61	+1.1
5,582,052	+		PP_4910	0.74	+1.5
5,582,052	+		PP_4910	0.74	-0.2
5,582,253	-		PP_4910	0.88	-0.0
5,582,360	+				+1.3
5,582,360	+				+0.4
5,582,361	-				+0.2
5,582,361	-				+2.5
5,582,361	-				+1.8
5,582,429	-				+0.6
5,582,441	+				+0.5
5,582,441	+				-0.5
5,582,442	-				-0.2
5,582,442	-				-0.8
5,582,541	-				-0.6
5,582,575	+				-2.0
5,582,835	+		PP_4911	0.32	+0.4
5,582,835	+		PP_4911	0.32	+0.1
5,582,835	+		PP_4911	0.32	+0.8
5,582,836	-		PP_4911	0.33	+0.0
5,582,836	-		PP_4911	0.33	+0.5
5,582,980	+		PP_4911	0.52	+2.0
5,582,980	+		PP_4911	0.52	+1.3
5,582,983	+		PP_4911	0.52	-0.0
5,582,983	+		PP_4911	0.52	-0.2
5,582,983	+		PP_4911	0.52	-0.0
5,582,984	-		PP_4911	0.52	-0.5
5,582,984	-		PP_4911	0.52	+0.9
5,583,128	+		PP_4911	0.71	-1.3
5,583,341	+				-0.7
5,583,341	+				+0.8
5,583,341	+				+0.4
5,583,341	+				-0.3
5,583,341	+				+1.5
5,583,341	+				-1.0
5,583,341	+				+0.3
5,583,341	+				-0.2
5,583,342	-				-0.1
5,583,342	-				-0.6
5,583,342	-				-3.6
5,583,342	-				+0.5
5,583,342	-				-1.0
5,583,342	-				+0.4
5,583,342	-				+0.1
5,583,347	+				+0.9
5,583,347	+				-0.8
5,583,347	+				-0.0
5,583,347	+				+0.0
5,583,348	-				+0.5
5,583,348	-				-0.5
5,583,348	-				-1.1
5,583,348	-				-0.6
5,583,391	+				-0.1
5,583,391	+				+0.3
5,583,392	-				+0.7
5,583,392	-				+0.8
5,583,405	+				+0.3