Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4644 and PP_4645 are separated by 176 nucleotides PP_4645 and PP_4646 are separated by 123 nucleotides
PP_4644: PP_4644 - DNA repair enzyme, at 5,268,968 to 5,270,338
_4644
PP_4645: PP_4645 - Large-conductance mechanosensitive channel, at 5,270,515 to 5,270,934
_4645
PP_4646: PP_4646 - ferredoxin--NADP(+) reductase, at 5,271,058 to 5,271,834
_4646
Position (kb) 5270
5271 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5269.623 kb on + strand, within PP_4644 at 5269.624 kb on - strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.728 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.968 kb on + strand, within PP_4644 at 5269.969 kb on - strand, within PP_4644 at 5270.316 kb on + strand at 5270.316 kb on + strand at 5270.316 kb on + strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.317 kb on - strand at 5270.370 kb on + strand at 5270.370 kb on + strand at 5270.370 kb on + strand at 5270.371 kb on - strand at 5270.371 kb on - strand at 5270.424 kb on + strand at 5270.465 kb on + strand at 5270.466 kb on - strand at 5270.466 kb on - strand at 5270.474 kb on + strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.475 kb on - strand at 5270.485 kb on - strand at 5270.485 kb on - strand at 5270.501 kb on - strand at 5270.580 kb on + strand, within PP_4645 at 5270.717 kb on + strand, within PP_4645 at 5270.717 kb on + strand, within PP_4645 at 5270.718 kb on - strand, within PP_4645 at 5270.718 kb on - strand, within PP_4645 at 5270.737 kb on + strand, within PP_4645 at 5270.760 kb on - strand, within PP_4645 at 5270.760 kb on - strand, within PP_4645 at 5271.031 kb on - strand at 5271.059 kb on + strand at 5271.060 kb on - strand at 5271.902 kb on + strand at 5271.903 kb on - strand at 5271.903 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 5,269,623 + PP_4644 0.48 +0.4 5,269,624 - PP_4644 0.48 -0.4 5,269,728 + PP_4644 0.55 +0.4 5,269,728 + PP_4644 0.55 +0.4 5,269,728 + PP_4644 0.55 -0.5 5,269,728 + PP_4644 0.55 -0.3 5,269,968 + PP_4644 0.73 +0.1 5,269,968 + PP_4644 0.73 +0.2 5,269,968 + PP_4644 0.73 +0.9 5,269,968 + PP_4644 0.73 +0.4 5,269,968 + PP_4644 0.73 +0.4 5,269,968 + PP_4644 0.73 -1.9 5,269,969 - PP_4644 0.73 -0.4 5,270,316 + +1.2 5,270,316 + -0.3 5,270,316 + +0.2 5,270,317 - +0.2 5,270,317 - -1.0 5,270,317 - +0.9 5,270,317 - -0.2 5,270,317 - +1.0 5,270,370 + -1.1 5,270,370 + +0.6 5,270,370 + -1.1 5,270,371 - -0.5 5,270,371 - +0.3 5,270,424 + +1.6 5,270,465 + +0.2 5,270,466 - -0.0 5,270,466 - +0.2 5,270,474 + +0.6 5,270,475 - +0.1 5,270,475 - -0.1 5,270,475 - +0.5 5,270,475 - -0.2 5,270,475 - -0.6 5,270,485 - +1.6 5,270,485 - +0.1 5,270,501 - -0.8 5,270,580 + PP_4645 0.15 +0.8 5,270,717 + PP_4645 0.48 +0.8 5,270,717 + PP_4645 0.48 +0.9 5,270,718 - PP_4645 0.48 +0.2 5,270,718 - PP_4645 0.48 +2.1 5,270,737 + PP_4645 0.53 +0.3 5,270,760 - PP_4645 0.58 -0.8 5,270,760 - PP_4645 0.58 -0.7 5,271,031 - +0.5 5,271,059 + +0.7 5,271,060 - -0.4 5,271,902 + +0.0 5,271,903 - -0.4 5,271,903 - -0.0
Or see this region's nucleotide sequence