Strain Fitness in Pseudomonas putida KT2440 around PP_4382

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,974,688	+		PP_4381	0.55	+0.3
4,974,688	+		PP_4381	0.55	+1.5
4,974,828	+		PP_4381	0.62	+0.5
4,974,829	-		PP_4381	0.62	+1.4
4,974,829	-		PP_4381	0.62	+0.7
4,974,829	-		PP_4381	0.62	+1.7
4,974,931	-		PP_4381	0.67	+0.9
4,974,931	-		PP_4381	0.67	+1.3
4,974,939	+		PP_4381	0.67	+1.1
4,974,939	+		PP_4381	0.67	+1.2
4,974,940	-		PP_4381	0.67	+0.8
4,974,940	-		PP_4381	0.67	+1.7
4,974,940	-		PP_4381	0.67	+1.2
4,974,940	-		PP_4381	0.67	+0.2
4,974,940	-		PP_4381	0.67	+0.8
4,974,940	-		PP_4381	0.67	+0.8
4,974,971	+		PP_4381	0.69	+2.1
4,975,068	+		PP_4381	0.74	+1.1
4,975,069	-		PP_4381	0.74	+1.6
4,975,069	-		PP_4381	0.74	+0.7
4,975,396	-		PP_4381	0.90	+1.2
4,975,396	-		PP_4381	0.90	+0.6
4,975,396	-		PP_4381	0.90	+2.7
4,975,404	+				+1.7
4,975,404	+				+1.5
4,975,404	+				-0.3
4,975,405	-				+1.1
4,975,405	-				+0.9
4,975,405	-				+1.6
4,975,504	-				+0.9
4,975,534	+				+1.7
4,975,608	+				+1.3
4,975,608	+				+0.5
4,975,617	+				+1.0
4,975,619	+				+1.1
4,975,620	-				-2.0
4,975,620	-				-0.2
4,975,647	+				+0.2
4,975,648	-				-0.5
4,975,648	-				+0.0
4,975,717	-				+0.4
4,975,782	+		PP_4382	0.14	+0.5
4,975,782	+		PP_4382	0.14	+1.8
4,975,807	+		PP_4382	0.17	+1.4
4,975,808	-		PP_4382	0.17	+0.8
4,975,833	+		PP_4382	0.19	+0.6
4,975,834	-		PP_4382	0.19	+1.2
4,975,842	+		PP_4382	0.20	+0.6
4,975,842	+		PP_4382	0.20	-0.1
4,975,843	-		PP_4382	0.20	+0.3
4,976,031	+		PP_4382	0.36	+1.1
4,976,429	-		PP_4382	0.70	-0.7
4,976,532	+		PP_4382	0.79	+0.9
4,976,532	+		PP_4382	0.79	+0.9
4,976,532	+		PP_4382	0.79	+1.4
4,976,532	+		PP_4382	0.79	+1.0
4,976,532	+		PP_4382	0.79	+0.4
4,976,533	-		PP_4382	0.79	+1.6
4,976,533	-		PP_4382	0.79	+0.7
4,976,533	-		PP_4382	0.79	+0.8
4,976,533	-		PP_4382	0.79	+1.3
4,976,544	+		PP_4382	0.80	+0.9
4,976,750	+				+0.8
4,977,093	+		PP_4383	0.28	+1.0
4,977,173	+		PP_4383	0.35	+1.1
4,977,173	+		PP_4383	0.35	+1.2
4,977,174	-		PP_4383	0.35	-0.7
4,977,546	+		PP_4383	0.69	+0.7