Strain Fitness in Pseudomonas putida KT2440 around PP_4344

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,933,463	+		PP_4343	0.25	-3.2
4,933,464	-		PP_4343	0.25	-0.6
4,933,545	+		PP_4343	0.31	-3.2
4,933,546	-		PP_4343	0.31	+0.3
4,933,731	-		PP_4343	0.45	-3.9
4,934,312	+		PP_4343	0.90	-1.8
4,934,313	-		PP_4343	0.90	-0.7
4,934,439	+				-2.4
4,934,440	-				-0.9
4,934,512	-				+1.0
4,934,675	+		PP_4344	0.10	-0.7
4,934,675	+		PP_4344	0.10	-2.7
4,934,675	+		PP_4344	0.10	-1.0
4,934,675	+		PP_4344	0.10	+0.0
4,934,675	+		PP_4344	0.10	-1.0
4,934,676	-		PP_4344	0.10	+1.9
4,934,676	-		PP_4344	0.10	+0.6
4,934,676	-		PP_4344	0.10	+0.9
4,934,676	-		PP_4344	0.10	+0.4
4,934,727	-		PP_4344	0.13	+1.3
4,934,763	-		PP_4344	0.14	+0.3
4,934,772	+		PP_4344	0.15	-0.6
4,935,000	-		PP_4344	0.25	+1.6
4,935,209	+		PP_4344	0.35	+0.0
4,935,265	+		PP_4344	0.38	+0.5
4,935,265	+		PP_4344	0.38	+1.7
4,935,616	+		PP_4344	0.54	+0.6
4,935,616	+		PP_4344	0.54	+1.6
4,935,865	+		PP_4344	0.66	+1.6
4,935,865	+		PP_4344	0.66	+1.7
4,935,865	+		PP_4344	0.66	+1.3
4,935,866	-		PP_4344	0.66	+0.5
4,935,866	-		PP_4344	0.66	+0.7
4,935,893	+		PP_4344	0.67	+1.3
4,935,893	+		PP_4344	0.67	+2.1
4,935,893	+		PP_4344	0.67	+1.2
4,935,893	+		PP_4344	0.67	+2.0
4,935,893	+		PP_4344	0.67	+0.9
4,935,893	+		PP_4344	0.67	+0.5
4,935,894	-		PP_4344	0.67	+1.2
4,935,894	-		PP_4344	0.67	+0.4
4,935,894	-		PP_4344	0.67	+2.2
4,935,894	-		PP_4344	0.67	+2.0
4,935,894	-		PP_4344	0.67	+1.9
4,936,007	-		PP_4344	0.73	+1.6
4,936,007	-		PP_4344	0.73	+1.3
4,936,149	-		PP_4344	0.79	+1.5
4,936,149	-		PP_4344	0.79	+0.9
4,936,222	+		PP_4344	0.83	+1.6
4,936,222	+		PP_4344	0.83	+1.6
4,936,222	+		PP_4344	0.83	+1.7
4,936,222	+		PP_4344	0.83	+0.8
4,936,223	-		PP_4344	0.83	+3.2
4,936,223	-		PP_4344	0.83	+2.0
4,936,223	-		PP_4344	0.83	+0.9
4,936,223	-		PP_4344	0.83	+1.4
4,936,226	+		PP_4344	0.83	+1.3
4,936,227	-		PP_4344	0.83	+1.7
4,936,400	-				+1.4
4,936,402	-				+0.1
4,936,794	+				-0.5
4,936,794	+				+0.6
4,936,794	+				-0.2
4,936,795	-				+0.3
4,936,795	-				-0.2
4,936,877	+				+0.0
4,936,877	+				-0.3
4,936,878	-				-0.5
4,936,887	+				-0.5
4,936,888	-				+0.1
4,936,940	+				-0.0
4,936,947	-				+1.0
4,936,947	-				-0.3
4,936,982	+				-0.3
4,937,024	+				-1.9
4,937,030	+				-0.4
4,937,031	-				-0.6
4,937,054	+				-1.7
4,937,070	+				-0.4
4,937,070	+				-0.6
4,937,099	-		PP_4345	0.13	-2.3
4,937,220	-		PP_4345	0.31	+0.2
4,937,223	+		PP_4345	0.31	+0.5
4,937,223	+		PP_4345	0.31	+0.7
4,937,234	+		PP_4345	0.33	-0.5
4,937,235	-		PP_4345	0.33	-0.8
4,937,283	+		PP_4345	0.40	-1.2
4,937,283	+		PP_4345	0.40	+0.4
4,937,283	+		PP_4345	0.40	-0.5
4,937,283	+		PP_4345	0.40	-1.0
4,937,283	+		PP_4345	0.40	-0.3
4,937,284	-		PP_4345	0.40	+0.8
4,937,374	+		PP_4345	0.53	+0.2
4,937,374	+		PP_4345	0.53	-0.1
4,937,378	+		PP_4345	0.54	+0.5
4,937,484	-		PP_4345	0.69	-0.1
4,937,567	+		PP_4345	0.81	+0.3