Strain Fitness in Pseudomonas putida KT2440 around PP_4337

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,925,861	+		PP_4335	0.81	+0.4
4,925,884	+		PP_4335	0.83	+0.9
4,925,892	+		PP_4335	0.84	+0.7
4,925,892	+		PP_4335	0.84	+0.8
4,925,892	+		PP_4335	0.84	+0.6
4,925,892	+		PP_4335	0.84	+0.4
4,925,893	-		PP_4335	0.84	+0.4
4,925,893	-		PP_4335	0.84	+0.4
4,925,893	-		PP_4335	0.84	+0.9
4,925,896	+		PP_4335	0.85	+0.8
4,925,897	-		PP_4335	0.85	+0.3
4,925,897	-		PP_4335	0.85	-0.1
4,925,897	-		PP_4335	0.85	+0.0
4,925,922	+		PP_4335	0.88	+0.2
4,925,922	+		PP_4335	0.88	+1.3
4,925,922	+		PP_4335	0.88	-0.2
4,925,923	-		PP_4335	0.88	+0.6
4,925,967	+				-1.1
4,925,967	+				+1.5
4,926,170	+				+4.2
4,926,171	-		PP_4336	0.19	+0.3
4,926,171	-		PP_4336	0.19	+0.0
4,926,198	+		PP_4336	0.23	+0.1
4,926,274	+		PP_4336	0.33	+0.6
4,926,275	-		PP_4336	0.33	+0.5
4,926,316	-		PP_4336	0.39	+0.2
4,926,336	-		PP_4336	0.41	+0.1
4,926,336	-		PP_4336	0.41	+0.1
4,926,371	-		PP_4336	0.46	+1.1
4,926,450	+		PP_4336	0.57	+1.4
4,926,450	+		PP_4336	0.57	+1.0
4,926,612	-		PP_4336	0.79	-0.5
4,926,815	+				+0.9
4,926,815	+				+1.0
4,926,863	+				+1.0
4,926,863	+				+2.0
4,926,863	+				+0.7
4,926,864	-				+2.0
4,926,986	+		PP_4337	0.19	+0.2
4,926,986	+		PP_4337	0.19	+1.5
4,926,987	-		PP_4337	0.20	-0.3
4,927,031	+		PP_4337	0.24	+1.1
4,927,031	+		PP_4337	0.24	+1.3
4,927,306	-		PP_4337	0.48	+1.4
4,927,306	-		PP_4337	0.48	-0.2
4,927,420	-		PP_4337	0.58	+1.5
4,927,466	+		PP_4337	0.63	+0.9
4,927,466	+		PP_4337	0.63	+0.4
4,927,466	+		PP_4337	0.63	+0.5
4,927,466	+		PP_4337	0.63	+1.4
4,927,689	+		PP_4337	0.83	+1.4
4,927,882	-				+0.7
4,927,893	+				+0.4
4,927,893	+				+0.9
4,927,933	+				+0.7
4,927,933	+				+0.4
4,928,190	+		PP_4338	0.12	+0.1
4,928,191	-		PP_4338	0.12	-1.3
4,928,523	+		PP_4338	0.27	-0.1
4,928,523	+		PP_4338	0.27	+0.3
4,928,523	+		PP_4338	0.27	+0.8
4,928,676	-		PP_4338	0.33	-0.9
4,928,676	-		PP_4338	0.33	-0.9
4,928,783	+		PP_4338	0.38	+1.1
4,928,783	+		PP_4338	0.38	-1.2
4,928,784	-		PP_4338	0.38	-0.9
4,928,784	-		PP_4338	0.38	-1.3
4,928,784	-		PP_4338	0.38	-0.6