Strain Fitness in Pseudomonas putida KT2440 around PP_4060

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,582,635	-		PP_4059	0.76	-1.1
4,582,691	+				+2.1
4,582,692	-		PP_4059	0.78	-0.8
4,582,692	-		PP_4059	0.78	-0.0
4,582,781	+		PP_4059	0.81	-0.0
4,582,781	+		PP_4059	0.81	-0.8
4,582,781	+		PP_4059	0.81	-1.5
4,582,810	+		PP_4059	0.81	+0.9
4,582,810	+		PP_4059	0.81	-2.2
4,582,810	+		PP_4059	0.81	+0.5
4,582,811	-		PP_4059	0.81	-0.2
4,582,811	-		PP_4059	0.81	-0.2
4,582,898	+		PP_4059	0.84	+0.4
4,582,917	-		PP_4059	0.85	+0.4
4,582,988	+		PP_4059	0.87	-0.6
4,583,015	+		PP_4059	0.88	-1.7
4,583,015	+		PP_4059	0.88	+0.4
4,583,015	+		PP_4059	0.88	+0.2
4,583,016	-		PP_4059	0.88	+0.2
4,583,016	-		PP_4059	0.88	+0.6
4,583,016	-		PP_4059	0.88	+0.1
4,583,192	+				+0.1
4,583,192	+				+0.3
4,583,235	-				-0.9
4,583,278	-				-1.1
4,583,279	+				-0.6
4,583,379	-				-0.4
4,583,482	-				-1.4
4,583,493	+				-0.8
4,583,556	+				+0.2
4,583,556	+				+0.0
4,583,568	+				-1.8
4,583,568	+				+0.0
4,583,569	-				+0.6
4,583,599	+				+0.2
4,583,650	-				+1.8
4,583,650	-				+1.9
4,583,650	-				+2.2
4,583,812	+		PP_4060	0.11	+1.1
4,583,813	-		PP_4060	0.11	+1.7
4,583,813	-		PP_4060	0.11	+2.6
4,583,813	-		PP_4060	0.11	+2.1
4,583,831	+		PP_4060	0.12	+1.3
4,583,832	-		PP_4060	0.12	+1.7
4,583,845	+		PP_4060	0.12	+1.4
4,583,845	+		PP_4060	0.12	+0.2
4,583,922	-		PP_4060	0.16	+1.5
4,583,922	-		PP_4060	0.16	+1.4
4,583,990	-		PP_4060	0.20	+0.6
4,583,990	-		PP_4060	0.20	+1.7
4,584,007	+		PP_4060	0.21	+0.4
4,584,008	-		PP_4060	0.21	+1.8
4,584,058	+		PP_4060	0.23	+1.3
4,584,058	+		PP_4060	0.23	+0.4
4,584,058	+		PP_4060	0.23	+0.3
4,584,058	+				+0.6
4,584,059	-		PP_4060	0.23	+2.9
4,584,059	-		PP_4060	0.23	+2.4
4,584,059	-		PP_4060	0.23	+1.0
4,584,059	-		PP_4060	0.23	+1.0
4,584,059	-		PP_4060	0.23	+1.4
4,584,059	-		PP_4060	0.23	+1.6
4,584,158	+		PP_4060	0.28	+0.4
4,584,158	+		PP_4060	0.28	+0.7
4,584,159	-		PP_4060	0.28	+0.9
4,584,259	+		PP_4060	0.33	+1.0
4,584,259	+		PP_4060	0.33	+0.9
4,584,259	+		PP_4060	0.33	-1.3
4,584,260	-		PP_4060	0.33	+2.1
4,584,263	+		PP_4060	0.33	-0.2
4,584,263	+				+0.5
4,584,263	+		PP_4060	0.33	+0.4
4,584,263	+		PP_4060	0.33	+1.0
4,584,264	-		PP_4060	0.34	+1.0
4,584,264	-		PP_4060	0.34	+0.4
4,584,265	+		PP_4060	0.34	-0.2
4,584,265	+		PP_4060	0.34	+1.9
4,584,265	+		PP_4060	0.34	+0.8
4,584,265	+		PP_4060	0.34	+0.2
4,584,265	+		PP_4060	0.34	-1.4
4,584,265	+		PP_4060	0.34	+1.0
4,584,265	+		PP_4060	0.34	+1.7
4,584,265	+		PP_4060	0.34	+1.1
4,584,266	-		PP_4060	0.34	+1.3
4,584,266	-		PP_4060	0.34	-0.8
4,584,266	-		PP_4060	0.34	+0.7
4,584,266	-		PP_4060	0.34	+0.9
4,584,266	-		PP_4060	0.34	+0.9
4,584,266	-		PP_4060	0.34	+1.7
4,584,318	-		PP_4060	0.36	+1.2
4,584,554	-		PP_4060	0.48	+0.9
4,584,847	+		PP_4060	0.63	+1.6
4,584,847	+		PP_4060	0.63	+1.0
4,584,847	+		PP_4060	0.63	-0.4
4,584,848	-		PP_4060	0.63	+0.3
4,584,955	+		PP_4060	0.68	+0.9
4,584,956	-		PP_4060	0.68	+0.9
4,584,956	-		PP_4060	0.68	+0.3
4,585,021	+		PP_4060	0.72	+0.7
4,585,022	-		PP_4060	0.72	+1.5
4,585,022	-		PP_4060	0.72	+0.1
4,585,022	-		PP_4060	0.72	+1.5
4,585,025	+		PP_4060	0.72	+0.3
4,585,025	+		PP_4060	0.72	+1.9
4,585,026	-		PP_4060	0.72	+1.8
4,585,026	-		PP_4060	0.72	+1.0
4,585,026	-		PP_4060	0.72	+1.5
4,585,026	-		PP_4060	0.72	+1.8
4,585,095	-		PP_4060	0.75	+1.3
4,585,225	+		PP_4060	0.82	+0.2
4,585,226	-		PP_4060	0.82	+1.1
4,585,226	-		PP_4060	0.82	+1.4
4,585,249	+		PP_4060	0.83	+0.8
4,585,250	-		PP_4060	0.83	+1.8
4,585,250	-		PP_4060	0.83	-3.2
4,585,250	-		PP_4060	0.83	+1.6
4,585,250	-		PP_4060	0.83	+1.4
4,585,280	+		PP_4060	0.85	+0.6
4,585,429	+				+0.7
4,585,646	-				-0.1
4,585,684	-				-0.9
4,585,720	-				-1.1
4,585,720	-				+0.3
4,585,720	-				+1.0
4,585,720	-				+0.1
4,585,915	+				-0.5
4,585,916	-				-0.1
4,585,916	-				-0.6
4,586,090	-				+0.2
4,586,090	-				+0.7
4,586,218	-				+0.6
4,586,234	+				-0.7
4,586,234	+				+0.3
4,586,235	-				+0.8
4,586,235	-				+0.9
4,586,235	-				-0.6
4,586,236	+				+1.1
4,586,236	+				-1.0
4,586,237	-				-0.3
4,586,237	-				-0.1
4,586,238	+				-0.1
4,586,238	+				-0.1
4,586,350	-		PP_4063	0.13	-0.3
4,586,487	+		PP_4063	0.21	+0.2
4,586,488	-		PP_4063	0.21	-0.2