Strain Fitness in Pseudomonas putida KT2440 around PP_3971

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,478,974	-		PP_3970	0.27	-0.8
4,479,008	+		PP_3970	0.30	-0.2
4,479,008	+		PP_3970	0.30	-0.8
4,479,008	+		PP_3970	0.30	-0.3
4,479,008	+		PP_3970	0.30	-2.5
4,479,008	+		PP_3970	0.30	-0.4
4,479,008	+		PP_3970	0.30	+0.2
4,479,008	+		PP_3970	0.30	-0.8
4,479,034	+		PP_3970	0.32	-0.0
4,479,046	+		PP_3970	0.33	+0.4
4,479,047	-		PP_3970	0.33	-0.2
4,479,077	-		PP_3970	0.35	-0.4
4,479,077	-		PP_3970	0.35	-0.9
4,479,077	-		PP_3970	0.35	+0.5
4,479,077	-				-1.1
4,479,081	+		PP_3970	0.36	-0.2
4,479,153	-		PP_3970	0.42	+0.6
4,479,226	+		PP_3970	0.48	+0.4
4,479,227	-		PP_3970	0.48	+0.9
4,479,227	-		PP_3970	0.48	+0.0
4,479,227	-		PP_3970	0.48	+0.3
4,479,227	-		PP_3970	0.48	+0.2
4,479,325	+		PP_3970	0.56	-0.0
4,479,504	+		PP_3970	0.71	+0.9
4,479,505	-		PP_3970	0.71	-0.4
4,479,558	-		PP_3970	0.75	-0.2
4,479,577	+		PP_3970	0.77	+0.0
4,479,577	+		PP_3970	0.77	+0.0
4,479,577	+		PP_3970	0.77	+0.7
4,479,578	-		PP_3970	0.77	-0.5
4,479,578	-		PP_3970	0.77	+0.9
4,479,734	+				-0.5
4,479,734	+				-0.4
4,479,734	+				+0.3
4,479,735	-				-0.9
4,479,740	+				-0.0
4,479,761	-				+0.7
4,479,786	+				-0.2
4,479,851	-				-0.6
4,479,851	-				-3.8
4,479,851	-				-0.5
4,479,884	+				-0.5
4,479,884	+				-2.0
4,480,027	-		PP_3971	0.69	+1.9
4,480,027	-		PP_3971	0.69	+1.3
4,480,116	+				-0.4
4,480,117	-				+0.1
4,480,117	-				-1.0
4,480,117	-				+0.2
4,480,117	-				-0.2
4,480,117	-				+0.0
4,480,117	-				+0.8
4,480,118	+				+1.0
4,480,119	-				-1.6
4,480,119	-				-0.3
4,480,152	+				+0.3
4,480,153	-				+0.5
4,480,153	-				-0.6
4,480,153	-				-0.1
4,480,231	+				+1.0
4,480,231	+				-0.7
4,480,232	-				-0.2
4,480,234	+				-0.0
4,480,234	+				-0.4
4,480,234	+				-0.6
4,480,278	+		PP_3972	0.11	+0.6
4,480,279	-		PP_3972	0.11	+0.8
4,480,279	-		PP_3972	0.11	-0.4
4,480,291	+		PP_3972	0.12	-0.2
4,480,344	+		PP_3972	0.16	-0.6
4,480,345	-		PP_3972	0.16	+0.9
4,480,440	+		PP_3972	0.23	-1.1
4,480,440	+		PP_3972	0.23	+0.3
4,480,440	+		PP_3972	0.23	-0.9
4,480,440	+		PP_3972	0.23	+0.9
4,480,538	+		PP_3972	0.31	-0.5
4,480,538	+		PP_3972	0.31	-0.7
4,480,539	-		PP_3972	0.31	+0.5
4,480,539	-		PP_3972	0.31	-0.5
4,480,613	+		PP_3972	0.36	+0.9
4,480,613	+		PP_3972	0.36	+0.3
4,480,614	-		PP_3972	0.36	-1.4
4,480,614	-		PP_3972	0.36	+0.4
4,480,614	-		PP_3972	0.36	-0.2
4,480,743	+		PP_3972	0.46	-1.1
4,480,744	-		PP_3972	0.46	+0.4
4,480,744	-		PP_3972	0.46	+0.7
4,480,840	+		PP_3972	0.53	-0.5
4,480,856	-		PP_3972	0.55	-0.7
4,480,940	-		PP_3972	0.61	+0.5
4,481,041	+		PP_3972	0.69	-0.4
4,481,041	+		PP_3972	0.69	-1.2
4,481,041	+		PP_3972	0.69	+0.2
4,481,042	-		PP_3972	0.69	-0.3
4,481,042	-		PP_3972	0.69	-0.0
4,481,042	-		PP_3972	0.69	+0.3
4,481,042	-		PP_3972	0.69	+0.4
4,481,086	+		PP_3972	0.72	+0.0
4,481,086	+		PP_3972	0.72	+0.3
4,481,087	-		PP_3972	0.72	-1.9
4,481,087	-		PP_3972	0.72	+0.9
4,481,087	-		PP_3972	0.72	+0.1
4,481,087	-		PP_3972	0.72	-0.5
4,481,087	-		PP_3972	0.72	-0.4