Strain Fitness in Pseudomonas putida KT2440 around PP_3637

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_3636 and PP_3637 overlap by 14 nucleotidesPP_3637 and PP_3638 overlap by 4 nucleotides PP_3636: PP_3636 - putative Sulfonate ABC transporter, periplasmic sulfonate-binding protein, at 4,131,955 to 4,133,160 _3636 PP_3637: PP_3637 - putative Sulfonate ABC transporter, ATP-binding protein, at 4,133,147 to 4,133,968 _3637 PP_3638: PP_3638 - putative Acyl-CoA dehydrogenase, at 4,133,965 to 4,135,029 _3638 Position (kb) 4133 4134Strain fitness (log2 ratio) -3 -2 -1 0 1at 4132.169 kb on + strand, within PP_3636at 4132.233 kb on - strand, within PP_3636at 4132.233 kb on - strand, within PP_3636at 4132.298 kb on + strand, within PP_3636at 4132.298 kb on + strand, within PP_3636at 4132.299 kb on - strand, within PP_3636at 4132.413 kb on + strand, within PP_3636at 4132.465 kb on + strand, within PP_3636at 4132.465 kb on + strand, within PP_3636at 4132.466 kb on - strand, within PP_3636at 4132.466 kb on - strand, within PP_3636at 4132.495 kb on + strand, within PP_3636at 4132.495 kb on + strand, within PP_3636at 4132.496 kb on - strand, within PP_3636at 4132.541 kb on + strand, within PP_3636at 4132.541 kb on + strand, within PP_3636at 4132.684 kb on + strand, within PP_3636at 4132.684 kb on + strand, within PP_3636at 4132.703 kb on + strand, within PP_3636at 4132.753 kb on + strand, within PP_3636at 4132.753 kb on + strand, within PP_3636at 4132.753 kb on + strand, within PP_3636at 4132.754 kb on - strand, within PP_3636at 4132.754 kb on - strand, within PP_3636at 4132.754 kb on - strand, within PP_3636at 4132.754 kb on - strand, within PP_3636at 4132.754 kb on - strand, within PP_3636at 4132.755 kb on + strand, within PP_3636at 4132.755 kb on + strand, within PP_3636at 4132.756 kb on - strand, within PP_3636at 4132.756 kb on - strand, within PP_3636at 4132.971 kb on + strand, within PP_3636at 4132.972 kb on - strand, within PP_3636at 4132.972 kb on - strand, within PP_3636at 4132.972 kb on - strand, within PP_3636at 4133.192 kb on - strandat 4133.192 kb on - strandat 4133.333 kb on + strand, within PP_3637at 4134.086 kb on + strand, within PP_3638at 4134.087 kb on - strand, within PP_3638at 4134.087 kb on - strand, within PP_3638at 4134.087 kb on - strand, within PP_3638at 4134.087 kb on - strand, within PP_3638at 4134.087 kb on - strand, within PP_3638at 4134.121 kb on + strand, within PP_3638at 4134.370 kb on + strand, within PP_3638at 4134.481 kb on + strand, within PP_3638at 4134.481 kb on + strand, within PP_3638at 4134.481 kb on + strand, within PP_3638at 4134.482 kb on - strand, within PP_3638at 4134.588 kb on + strand, within PP_3638at 4134.589 kb on - strand, within PP_3638at 4134.589 kb on - strand, within PP_3638at 4134.785 kb on + strand, within PP_3638at 4134.786 kb on - strand, within PP_3638at 4134.949 kb on + strandat 4134.950 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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4,132,169 + PP_3636 0.18 +0.5
4,132,233 - PP_3636 0.23 -0.2
4,132,233 - PP_3636 0.23 -0.4
4,132,298 + PP_3636 0.28 -0.2
4,132,298 + PP_3636 0.28 -0.3
4,132,299 - PP_3636 0.29 -0.2
4,132,413 + PP_3636 0.38 -0.7
4,132,465 + PP_3636 0.42 +0.1
4,132,465 + PP_3636 0.42 +0.8
4,132,466 - PP_3636 0.42 +0.7
4,132,466 - PP_3636 0.42 -0.6
4,132,495 + PP_3636 0.45 -0.7
4,132,495 + PP_3636 0.45 -0.3
4,132,496 - PP_3636 0.45 -1.8
4,132,541 + PP_3636 0.49 +0.1
4,132,541 + PP_3636 0.49 +0.5
4,132,684 + PP_3636 0.60 -0.3
4,132,684 + PP_3636 0.60 +0.1
4,132,703 + PP_3636 0.62 -1.3
4,132,753 + PP_3636 0.66 +0.4
4,132,753 + PP_3636 0.66 -0.0
4,132,753 + PP_3636 0.66 +0.7
4,132,754 - PP_3636 0.66 -0.9
4,132,754 - PP_3636 0.66 +1.0
4,132,754 - PP_3636 0.66 -0.2
4,132,754 - PP_3636 0.66 +0.7
4,132,754 - PP_3636 0.66 +0.7
4,132,755 + PP_3636 0.66 +0.3
4,132,755 + PP_3636 0.66 -1.4
4,132,756 - PP_3636 0.66 -1.0
4,132,756 - PP_3636 0.66 -0.5
4,132,971 + PP_3636 0.84 -0.1
4,132,972 - PP_3636 0.84 -0.2
4,132,972 - PP_3636 0.84 -0.3
4,132,972 - PP_3636 0.84 -0.1
4,133,192 - -0.7
4,133,192 - +0.5
4,133,333 + PP_3637 0.23 +1.0
4,134,086 + PP_3638 0.11 -3.5
4,134,087 - PP_3638 0.11 +1.2
4,134,087 - PP_3638 0.11 +0.5
4,134,087 - PP_3638 0.11 -0.9
4,134,087 - PP_3638 0.11 +0.9
4,134,087 - PP_3638 0.11 +1.1
4,134,121 + PP_3638 0.15 +1.1
4,134,370 + PP_3638 0.38 +0.1
4,134,481 + PP_3638 0.48 -0.4
4,134,481 + PP_3638 0.48 +1.1
4,134,481 + PP_3638 0.48 -1.0
4,134,482 - PP_3638 0.49 +0.5
4,134,588 + PP_3638 0.58 -0.3
4,134,589 - PP_3638 0.59 -0.8
4,134,589 - PP_3638 0.59 -0.9
4,134,785 + PP_3638 0.77 +0.9
4,134,786 - PP_3638 0.77 -0.7
4,134,949 + +0.1
4,134,950 - -1.5

Or see this region's nucleotide sequence