Strain Fitness in Pseudomonas putida KT2440 around PP_3563

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
4,040,944	+		PP_3561	0.88	+0.2
4,040,944	+		PP_3561	0.88	-0.1
4,040,944	+		PP_3561	0.88	+0.1
4,040,945	-		PP_3561	0.88	-0.7
4,040,945	-		PP_3561	0.88	-1.2
4,040,945	-		PP_3561	0.88	+0.5
4,041,041	+				+0.1
4,041,049	-				+1.2
4,041,085	+				+0.8
4,041,085	+				-0.8
4,041,085	+				-1.1
4,041,085	+				-1.5
4,041,086	-				-0.2
4,041,086	-				-2.8
4,041,153	-		PP_3562	0.15	+0.0
4,041,331	+		PP_3562	0.43	+0.2
4,041,331	+		PP_3562	0.43	+0.2
4,041,331	+		PP_3562	0.43	-0.8
4,041,332	-		PP_3562	0.43	+0.2
4,041,332	-		PP_3562	0.43	-1.1
4,041,332	-		PP_3562	0.43	-0.5
4,041,332	-		PP_3562	0.43	-0.5
4,041,339	-		PP_3562	0.44	-0.0
4,041,528	-		PP_3562	0.73	+1.4
4,041,528	-		PP_3562	0.73	+0.3
4,041,599	+		PP_3562	0.83	+0.4
4,041,642	-				+0.5
4,041,677	+				+0.3
4,041,677	+				-0.4
4,041,677	+				-0.5
4,041,678	-				-0.2
4,041,678	-				+0.7
4,041,864	+				+1.3
4,041,865	-				+0.3
4,041,865	-				+0.4
4,041,865	-				-1.4
4,041,900	+				-2.4
4,042,150	+		PP_3563	0.28	-1.1
4,042,264	+		PP_3563	0.41	-0.8
4,042,571	-		PP_3563	0.77	-1.4
4,042,700	-				-0.0
4,042,706	+				-0.3
4,042,707	-				-0.5
4,042,732	+				-0.3
4,042,733	-				+0.4
4,042,762	+				+1.1
4,042,762	+				-1.3
4,042,763	-				+0.4
4,042,807	+				+0.6
4,042,842	+				-2.0
4,042,842	+				-0.1
4,042,842	+				-1.7
4,042,842	+				+0.3
4,042,843	-				+0.5
4,043,207	+		PP_3564	0.45	-0.3
4,043,208	-		PP_3564	0.45	+0.5
4,043,208	-		PP_3564	0.45	-0.1
4,043,225	+		PP_3564	0.47	-0.0
4,043,226	-		PP_3564	0.47	-0.0
4,043,274	+		PP_3564	0.52	+0.1
4,043,274	+		PP_3564	0.52	-1.3
4,043,275	-		PP_3564	0.52	-0.6
4,043,519	+		PP_3564	0.77	-0.5
4,043,520	-		PP_3564	0.77	-0.1
4,043,637	+		PP_3564	0.89	+0.7