Strain Fitness in Pseudomonas putida KT2440 around PP_3454

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,913,258	+		PP_3453	0.37	+0.1
3,913,259	-		PP_3453	0.37	+0.7
3,913,259	-		PP_3453	0.37	-0.1
3,913,270	+		PP_3453	0.38	-3.2
3,913,270	+		PP_3453	0.38	+0.1
3,913,270	+		PP_3453	0.38	-1.0
3,913,270	+		PP_3453	0.38	+0.7
3,913,271	-		PP_3453	0.38	-0.5
3,913,271	-		PP_3453	0.38	-0.1
3,913,271	-		PP_3453	0.38	+0.1
3,913,408	-		PP_3453	0.48	-0.2
3,913,408	-		PP_3453	0.48	+0.5
3,913,529	+		PP_3453	0.58	+1.0
3,913,530	-		PP_3453	0.58	-0.5
3,913,707	+		PP_3453	0.71	-0.2
3,913,707	+		PP_3453	0.71	-0.3
3,913,747	+		PP_3453	0.75	+0.1
3,913,748	-		PP_3453	0.75	+0.5
3,913,750	+		PP_3453	0.75	+1.2
3,913,750	+		PP_3453	0.75	-0.3
3,913,751	-		PP_3453	0.75	+0.2
3,913,777	+		PP_3453	0.77	-0.4
3,913,778	-		PP_3453	0.77	-0.5
3,913,941	+		PP_3453	0.89	+0.4
3,913,941	+		PP_3453	0.89	-0.2
3,913,941	+		PP_3453	0.89	-1.9
3,913,942	-		PP_3453	0.89	+0.9
3,913,942	-		PP_3453	0.89	+0.8
3,913,942	-		PP_3453	0.89	+0.5
3,913,942	-		PP_3453	0.89	+0.4
3,913,966	+				-0.9
3,913,966	+				-1.0
3,913,967	-				+1.1
3,913,967	-				+0.5
3,914,053	+				-1.3
3,914,054	-				+1.0
3,914,117	-				+0.4
3,914,117	-				+0.1
3,914,308	+		PP_3454	0.32	+0.8
3,914,308	+		PP_3454	0.32	+1.6
3,914,309	-		PP_3454	0.32	-0.3
3,914,309	-		PP_3454	0.32	+1.6
3,914,309	-		PP_3454	0.32	+1.9
3,914,491	+		PP_3454	0.58	-0.3
3,914,492	-		PP_3454	0.58	+0.5
3,914,517	+		PP_3454	0.62	-0.1
3,914,518	-		PP_3454	0.62	+0.8
3,914,666	-		PP_3454	0.83	+0.6
3,914,666	-		PP_3454	0.83	+0.6
3,914,710	-		PP_3454	0.89	+0.7
3,914,786	+				+0.5
3,914,787	-				+1.4
3,914,787	-				+0.2
3,914,812	+				-0.1
3,914,812	+				+0.1
3,914,812	+				+0.8
3,914,812	+				-0.6
3,914,813	-				+0.6
3,914,838	+				+1.0
3,914,909	+				+0.6
3,914,910	-				+0.4
3,914,911	+				-2.1
3,914,911	+				-1.5
3,914,912	-				+0.2
3,914,912	-				-0.5
3,914,969	+				-0.4
3,914,969	+				+0.7
3,914,969	+				-2.7
3,914,969	+				+0.1
3,914,969	+				-1.2
3,914,970	-				-1.8
3,914,970	-				-0.6
3,914,972	+				-0.9
3,915,004	+				-0.5
3,915,004	+				-2.7
3,915,004	+				+0.5
3,915,004	+				-0.4
3,915,004	+				-2.7
3,915,005	-				-0.5
3,915,006	+				+0.5
3,915,006	+				+0.1
3,915,007	-				+0.3
3,915,007	-				+0.6
3,915,007	-				-0.6
3,915,037	+				+0.3
3,915,037	+				-0.6
3,915,041	-				-1.9
3,915,306	+		PP_3455	0.23	+1.6
3,915,306	+		PP_3455	0.23	+0.5
3,915,306	+		PP_3455	0.23	-0.2
3,915,307	-				-0.7
3,915,307	-		PP_3455	0.23	-0.5
3,915,307	-		PP_3455	0.23	-0.3
3,915,307	-		PP_3455	0.23	-1.6
3,915,307	-		PP_3455	0.23	+1.4
3,915,307	-		PP_3455	0.23	+0.4
3,915,458	+		PP_3455	0.36	-0.6
3,915,459	-		PP_3455	0.36	+0.1
3,915,459	-		PP_3455	0.36	-0.8