Strain Fitness in Pseudomonas putida KT2440 around PP_3330

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,767,484	+		PP_3329	0.71	+0.1
3,767,485	-		PP_3329	0.71	+0.5
3,767,597	+		PP_3329	0.80	+1.0
3,767,598	-		PP_3329	0.80	-0.2
3,767,598	-		PP_3329	0.80	-0.7
3,767,598	-		PP_3329	0.80	+0.2
3,767,598	-		PP_3329	0.80	-0.1
3,767,598	-		PP_3329	0.80	-0.1
3,767,598	-		PP_3329	0.80	+0.3
3,767,598	-		PP_3329	0.80	-2.0
3,767,797	-				+0.7
3,767,855	+				-0.0
3,767,929	+				+0.4
3,767,929	+				-1.5
3,767,929	+				+0.4
3,767,930	-				-0.2
3,767,930	-				-0.4
3,767,930	-				-1.3
3,768,031	+		PP_5600	0.12	-1.5
3,768,105	+		PP_5600	0.31	-1.2
3,768,287	+		PP_5600	0.77	-0.2
3,768,756	+		PP_3330	0.16	-0.3
3,768,757	-		PP_3330	0.16	-0.3
3,768,858	+		PP_3330	0.20	-0.7
3,768,859	-		PP_3330	0.20	-2.9
3,768,859	-		PP_3330	0.20	-2.7
3,768,996	+		PP_3330	0.27	-3.6
3,768,996	+		PP_3330	0.27	-0.5
3,768,997	-		PP_3330	0.27	-0.5
3,769,077	+		PP_3330	0.30	-1.0
3,769,077	+		PP_3330	0.30	-3.8
3,769,101	+		PP_3330	0.31	-1.6
3,769,102	-		PP_3330	0.31	-0.6
3,769,104	-		PP_3330	0.32	-2.0
3,769,104	-		PP_3330	0.32	-1.0
3,769,194	+		PP_3330	0.36	-1.3
3,769,195	-		PP_3330	0.36	-3.3
3,769,238	-		PP_3330	0.38	-1.5
3,769,256	+		PP_3330	0.39	-0.1
3,769,256	+		PP_3330	0.39	-3.5
3,769,257	-		PP_3330	0.39	-1.2
3,769,294	-		PP_3330	0.40	-1.6
3,769,294	-		PP_3330	0.40	-1.4
3,769,294	-		PP_3330	0.40	-1.3
3,769,314	+		PP_3330	0.41	-1.1
3,769,353	+		PP_3330	0.43	-1.7
3,769,382	+		PP_3330	0.44	-2.1
3,769,392	+		PP_3330	0.45	-2.9
3,769,392	+		PP_3330	0.45	-2.5
3,769,393	-		PP_3330	0.45	-2.9
3,769,393	-		PP_3330	0.45	-1.2
3,769,393	-		PP_3330	0.45	+0.0
3,769,398	+		PP_3330	0.45	-1.2
3,769,398	+		PP_3330	0.45	-1.5
3,769,398	+		PP_3330	0.45	-3.6
3,769,434	+		PP_3330	0.47	+0.4
3,769,434	+		PP_3330	0.47	-0.2
3,769,434	+		PP_3330	0.47	-1.6
3,769,435	-		PP_3330	0.47	-1.0
3,769,581	+		PP_3330	0.53	-1.0
3,769,582	-		PP_3330	0.53	-1.5
3,769,582	-		PP_3330	0.53	-1.6
3,769,606	-		PP_3330	0.55	-2.6
3,769,771	+		PP_3330	0.62	-1.1
3,769,771	+		PP_3330	0.62	-3.6
3,769,771	+		PP_3330	0.62	-3.5
3,769,771	+		PP_3330	0.62	-2.9
3,769,772	-		PP_3330	0.62	-1.7
3,769,772	-		PP_3330	0.62	-2.3
3,769,887	+		PP_3330	0.67	-1.0
3,769,887	+		PP_3330	0.67	-2.9
3,769,888	-		PP_3330	0.67	-1.6
3,769,914	+		PP_3330	0.69	-3.3
3,769,914	+		PP_3330	0.69	-3.8
3,769,915	-		PP_3330	0.69	-2.3
3,769,923	+		PP_3330	0.69	-0.8
3,770,020	+		PP_3330	0.73	+0.1
3,770,074	-		PP_3330	0.76	-4.1
3,770,093	+		PP_3330	0.77	-1.3
3,770,094	-		PP_3330	0.77	-0.5
3,770,094	-		PP_3330	0.77	-3.0
3,770,225	-		PP_3330	0.83	-3.3
3,770,235	+		PP_3330	0.83	-2.4
3,770,236	-		PP_3330	0.83	-2.9
3,770,334	+		PP_3330	0.88	-2.0
3,770,335	-		PP_3330	0.88	-0.3
3,770,335	-		PP_3330	0.88	-2.8
3,770,376	+		PP_3330	0.90	-0.8
3,770,377	-		PP_3330	0.90	-3.2
3,770,377	-		PP_3330	0.90	-3.3
3,770,428	-				-3.1
3,770,436	+				-0.4
3,770,514	+				-0.9
3,770,514	+				+0.6
3,770,515	-				-1.4
3,770,515	-				-1.2
3,770,547	+				-1.0
3,770,548	-				-2.4
3,770,550	+				-3.2
3,770,550	+				-0.5
3,770,595	+				-0.5
3,770,621	+				-0.4
3,770,621	+				-0.9
3,770,621	+				-1.7
3,770,671	-				-0.6
3,770,671	-				-0.8
3,770,699	+				-0.3
3,770,700	-				-0.1
3,770,700	-				-0.1
3,770,952	-		PP_3331	0.24	+0.9
3,770,975	+		PP_3331	0.26	-0.2
3,771,080	+		PP_3331	0.33	-0.2
3,771,080	+		PP_3331	0.33	-2.2
3,771,081	-		PP_3331	0.33	-2.9
3,771,276	+		PP_3331	0.46	+1.0
3,771,326	+		PP_3331	0.49	-0.4
3,771,366	+		PP_3331	0.52	+0.4