Strain Fitness in Pseudomonas putida KT2440 around PP_3263

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,696,834	+		PP_3262	0.35	-0.2
3,696,835	-		PP_3262	0.35	+1.6
3,696,988	+				+0.1
3,697,030	+				+0.0
3,697,031	-				+0.3
3,697,143	-		PP_5595	0.17	-0.9
3,697,143	-		PP_5595	0.17	-0.0
3,697,143	-		PP_5595	0.17	-1.0
3,697,145	+		PP_5595	0.18	+0.9
3,697,145	+				-0.1
3,697,145	+		PP_5595	0.18	-0.4
3,697,146	-		PP_5595	0.18	-0.9
3,697,146	-				+4.4
3,697,146	-		PP_5595	0.18	+0.7
3,697,146	-		PP_5595	0.18	+1.1
3,697,146	-		PP_5595	0.18	+0.6
3,697,146	-		PP_5595	0.18	-0.6
3,697,355	+		PP_5595	0.68	+0.1
3,697,355	+		PP_5595	0.68	-0.4
3,697,362	-		PP_5595	0.70	+0.4
3,697,362	-		PP_5595	0.70	+1.2
3,697,362	-		PP_5595	0.70	+0.5
3,697,362	-		PP_5595	0.70	+0.3
3,697,579	-				+0.6
3,697,579	-				-1.5
3,697,611	+				+0.2
3,697,611	+				-0.2
3,697,614	+		PP_3263	0.10	+0.5
3,697,614	+		PP_3263	0.10	-0.3
3,697,615	-		PP_3263	0.10	+0.0
3,697,615	-		PP_3263	0.10	-0.1
3,697,777	-		PP_3263	0.27	-0.0
3,697,777	-		PP_3263	0.27	-1.2
3,697,941	+		PP_3263	0.44	-0.4
3,697,991	-		PP_3263	0.50	+0.1
3,698,039	+		PP_3263	0.55	-0.5
3,698,039	+		PP_3263	0.55	-0.6
3,698,039	+				-1.3
3,698,059	+		PP_3263	0.57	+0.6
3,698,059	+		PP_3263	0.57	-1.8
3,698,059	+		PP_3263	0.57	-1.4
3,698,060	-		PP_3263	0.57	+1.1
3,698,060	-		PP_3263	0.57	-1.0
3,698,060	-		PP_3263	0.57	-1.5
3,698,060	-		PP_3263	0.57	-0.4
3,698,061	+		PP_3263	0.57	-1.2
3,698,062	-		PP_3263	0.57	-0.3
3,698,062	-		PP_3263	0.57	+0.2
3,698,196	+		PP_3263	0.71	-1.7
3,698,219	+		PP_3263	0.74	-0.2
3,698,234	+		PP_3263	0.75	+0.2
3,698,240	-		PP_3263	0.76	-0.6
3,698,240	-		PP_3263	0.76	-0.4
3,698,271	+		PP_3263	0.79	-0.7
3,698,271	+		PP_3263	0.79	+0.7
3,698,289	+		PP_3263	0.81	-1.3
3,698,289	+		PP_3263	0.81	-1.3
3,698,290	-		PP_3263	0.81	+0.3
3,698,290	-		PP_3263	0.81	+0.1
3,698,337	+		PP_3263	0.86	+0.5
3,698,338	-		PP_3263	0.86	-0.5
3,698,392	-				-0.4
3,698,837	+		PP_3264	0.31	-0.1
3,698,838	-		PP_3264	0.31	+0.5
3,698,870	+		PP_3264	0.33	+0.3
3,698,871	-				+0.2
3,698,871	-		PP_3264	0.33	+0.5
3,698,876	+		PP_3264	0.34	-0.2
3,698,877	-		PP_3264	0.34	-0.6
3,699,053	+		PP_3264	0.48	+0.1
3,699,053	+		PP_3264	0.48	-0.1
3,699,054	-		PP_3264	0.49	+0.2
3,699,054	-		PP_3264	0.49	+0.5
3,699,234	-		PP_3264	0.64	-0.1
3,699,266	-		PP_3264	0.66	+0.6
3,699,282	-		PP_3264	0.67	-0.4