Strain Fitness in Pseudomonas putida KT2440 around PP_2996

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
3,391,879	-		PP_2994	0.87	+0.5
3,392,021	+				-1.0
3,392,076	+				-0.4
3,392,168	-				+0.1
3,392,191	+				+0.3
3,392,191	+				+0.6
3,392,373	+		PP_2995	0.29	+0.6
3,392,373	+		PP_2995	0.29	-1.3
3,392,374	-		PP_2995	0.29	+0.3
3,392,381	+		PP_2995	0.31	-0.5
3,392,382	-		PP_2995	0.31	+0.7
3,392,382	-		PP_2995	0.31	-0.7
3,392,382	-		PP_2995	0.31	+0.2
3,392,382	-		PP_2995	0.31	-0.7
3,392,463	-		PP_2995	0.46	-1.0
3,392,463	-		PP_2995	0.46	-0.7
3,392,698	-		PP_2995	0.89	-1.5
3,392,784	+				+0.2
3,392,784	+				+0.1
3,392,784	+				+0.1
3,392,784	+				+0.4
3,392,785	-				-0.1
3,392,785	-				+0.7
3,392,785	-				+0.5
3,392,785	-				+0.1
3,392,785	-				+0.0
3,392,821	+				+0.4
3,392,821	+				-0.6
3,392,822	-				-0.6
3,392,822	-				+1.1
3,392,861	-				-0.1
3,392,879	+		PP_2996	0.13	+1.1
3,392,879	+		PP_2996	0.13	-0.3
3,392,880	-		PP_2996	0.13	+1.3
3,392,880	-		PP_2996	0.13	+0.4
3,392,915	+		PP_2996	0.21	+0.8
3,392,945	+		PP_2996	0.27	+0.6
3,392,946	-		PP_2996	0.27	+0.3
3,393,164	-		PP_2996	0.75	+0.5
3,393,173	+		PP_2996	0.77	-0.1
3,393,174	-		PP_2996	0.77	+0.1
3,393,174	-		PP_2996	0.77	-1.5
3,393,184	+		PP_2996	0.79	+0.6
3,393,185	-		PP_2996	0.80	+1.9
3,393,185	-		PP_2996	0.80	+0.1
3,393,185	-		PP_2996	0.80	+0.3
3,393,204	+		PP_2996	0.84	+1.3
3,393,204	+		PP_2996	0.84	+0.7
3,393,205	-		PP_2996	0.84	-0.6
3,393,273	-				-0.1
3,393,279	-				-0.4
3,393,290	-				+0.6
3,393,329	+				+0.1
3,393,329	+				+0.4
3,393,329	+				+0.6
3,393,330	-				-1.5
3,393,330	-				-0.6
3,393,335	+				-0.8
3,393,395	-				+0.6
3,393,473	+				-1.6
3,393,473	+				+1.0
3,393,474	-				+0.3
3,393,565	+				+0.1
3,393,631	-		PP_2997	0.14	+0.5
3,393,685	-		PP_2997	0.20	-0.0
3,393,702	+		PP_2997	0.22	-0.3
3,393,919	+		PP_2997	0.46	+0.0
3,393,919	+		PP_2997	0.46	-0.9
3,393,919	+		PP_2997	0.46	+0.6
3,393,919	+		PP_2997	0.46	+0.3
3,393,919	+		PP_2997	0.46	+0.9
3,393,920	-		PP_2997	0.46	+0.3
3,393,920	-		PP_2997	0.46	-0.4
3,393,920	-		PP_2997	0.46	-0.1
3,393,920	-		PP_2997	0.46	-0.5
3,393,920	-		PP_2997	0.46	+0.2
3,394,215	-		PP_2997	0.79	+0.8