Strain Fitness in Pseudomonas putida KT2440 around PP_2624

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,999,648	+		PP_2623	0.45	-0.7
2,999,649	-		PP_2623	0.45	+0.1
2,999,681	+		PP_2623	0.47	+0.4
2,999,681	+		PP_2623	0.47	+0.0
2,999,842	-		PP_2623	0.58	+0.6
2,999,934	-		PP_2623	0.64	+0.2
2,999,939	-		PP_2623	0.64	-1.3
2,999,976	-		PP_2623	0.67	+2.5
3,000,044	+		PP_2623	0.71	+1.2
3,000,044	+		PP_2623	0.71	+0.3
3,000,334	+				+1.6
3,000,373	+				+0.4
3,000,373	+				+0.4
3,000,373	+				-0.4
3,000,374	-				+1.3
3,000,415	-				+0.6
3,000,563	+		PP_2624	0.14	+0.5
3,000,564	-		PP_2624	0.14	-1.6
3,000,564	-		PP_2624	0.14	-1.7
3,000,815	+		PP_2624	0.64	-2.8
3,000,815	+		PP_2624	0.64	-1.1
3,000,815	+		PP_2624	0.64	-0.3
3,000,816	-		PP_2624	0.64	-1.5
3,000,816	-				-0.1
3,001,051	-				-0.5
3,001,083	-				-2.1
3,001,200	+				-1.2
3,001,286	-				-1.1
3,001,338	+				+0.2
3,001,338	+				+0.4
3,001,338	+				+0.2
3,001,339	-				-0.4
3,001,340	+				-0.0
3,001,470	-		PP_2625	0.28	+0.5
3,001,658	+		PP_2625	0.55	+0.1
3,001,658	+		PP_2625	0.55	+0.6
3,001,658	+		PP_2625	0.55	+0.1
3,001,659	-		PP_2625	0.55	+0.5
3,001,659	-		PP_2625	0.55	-0.6
3,001,677	+		PP_2625	0.57	-0.1
3,001,677	+		PP_2625	0.57	-0.8
3,001,677	+		PP_2625	0.57	+0.2
3,001,678	-				+0.7
3,001,740	+		PP_2625	0.67	+1.2
3,001,741	-		PP_2625	0.67	+0.7