Strain Fitness in Pseudomonas putida KT2440 around PP_2231

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,538,251	-		PP_2230	0.73	-0.5
2,538,312	-		PP_2230	0.75	-1.6
2,538,400	+		PP_2230	0.78	-0.1
2,538,401	-		PP_2230	0.78	+1.9
2,538,401	-		PP_2230	0.78	+0.7
2,538,401	-		PP_2230	0.78	+0.0
2,538,444	+		PP_2230	0.80	-1.2
2,538,476	+		PP_2230	0.81	-0.5
2,538,477	-		PP_2230	0.81	+1.1
2,538,477	-		PP_2230	0.81	-0.6
2,538,511	+		PP_2230	0.82	-0.1
2,538,555	+		PP_2230	0.83	+0.6
2,538,555	+		PP_2230	0.83	-0.1
2,538,556	-		PP_2230	0.83	+0.2
2,538,556	-		PP_2230	0.83	-0.2
2,538,557	+		PP_2230	0.83	+0.3
2,538,557	+		PP_2230	0.83	-0.0
2,538,557	+		PP_2230	0.83	+1.2
2,538,558	-				+2.7
2,538,558	-		PP_2230	0.84	-0.0
2,538,558	-		PP_2230	0.84	-0.2
2,538,558	-		PP_2230	0.84	+0.2
2,538,743	+		PP_2230	0.90	+2.0
2,538,743	+		PP_2230	0.90	+0.9
2,538,743	+		PP_2230	0.90	+1.0
2,538,743	+		PP_2230	0.90	-1.0
2,538,744	-		PP_2230	0.90	+0.3
2,538,744	-		PP_2230	0.90	+1.9
2,538,744	-		PP_2230	0.90	-0.2
2,538,744	-		PP_2230	0.90	+0.1
2,538,744	-		PP_2230	0.90	+0.1
2,538,747	-				-1.6
2,538,755	+				-0.0
2,538,755	+				+0.0
2,538,756	-				+0.1
2,538,784	+				-1.4
2,538,785	-				-1.3
2,538,900	-				+0.2
2,538,910	+				-1.4
2,538,964	-				+0.8
2,539,027	+				-0.1
2,539,027	+				+0.2
2,539,038	+				+0.0
2,539,038	+				+0.1
2,539,039	-				+0.9
2,539,047	-				-0.5
2,539,073	+				-0.7
2,539,151	+				+1.8
2,539,190	+				-1.4
2,539,191	-				-2.0
2,539,379	+		PP_2231	0.20	+0.3
2,539,379	+		PP_2231	0.20	+0.7
2,539,380	-		PP_2231	0.20	-0.1
2,539,732	-		PP_2231	0.57	+0.2
2,539,802	+		PP_2231	0.64	+0.2
2,539,802	+		PP_2231	0.64	+1.8
2,540,025	+		PP_2231	0.88	+0.3
2,540,116	-				+0.9
2,540,116	-				-1.3
2,540,116	-				+0.4
2,540,192	-				-0.2
2,540,193	+				+0.2
2,540,194	-				+0.1
2,540,220	+				+0.7
2,540,221	-				+0.5
2,540,222	+				-0.4
2,540,223	-				-2.3
2,540,223	-				-0.7
2,540,593	+		PP_2232	0.63	-0.8
2,540,593	+		PP_2232	0.63	+0.2
2,540,594	-		PP_2232	0.64	+0.7
2,540,636	-		PP_2232	0.72	+1.5
2,540,636	-		PP_2232	0.72	-0.0
2,540,718	+		PP_2232	0.87	-0.4
2,540,719	-		PP_2232	0.87	-1.5
2,540,729	-		PP_2232	0.89	-0.3
2,540,735	-				+0.5
2,540,739	+				-0.1
2,540,877	-				-0.3