Strain Fitness in Pseudomonas putida KT2440 around PP_2130

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,429,019	-				+0.5
2,429,029	+				-0.2
2,429,030	-				-0.5
2,429,030	-				+0.7
2,429,031	+				-1.6
2,429,031	+				+0.6
2,429,031	+				+0.4
2,429,031	+				-1.1
2,429,032	-				-0.3
2,429,032	-				+0.5
2,429,032	-				+0.3
2,429,085	+				-0.7
2,429,086	-				+0.8
2,429,431	+		PP_2129	0.45	+0.4
2,429,432	-		PP_2129	0.45	-1.2
2,429,458	-		PP_2129	0.49	-1.2
2,429,473	-		PP_2129	0.50	+0.7
2,429,562	-		PP_2129	0.62	-0.0
2,429,736	-		PP_2129	0.83	-1.3
2,429,868	+				+0.5
2,429,868	+				-0.3
2,429,868	+				+0.7
2,429,869	-				+0.5
2,429,869	-				-0.1
2,429,913	+				+0.2
2,429,936	+				-0.3
2,429,937	-				-0.2
2,430,050	+				-0.3
2,430,062	+				-1.0
2,430,079	+				-0.4
2,430,079	+				-0.4
2,430,185	+		PP_2130	0.10	-1.0
2,430,230	-		PP_2130	0.13	-0.8
2,430,230	-				-0.9
2,430,230	-		PP_2130	0.13	-1.7
2,430,230	-		PP_2130	0.13	+0.6
2,430,552	-		PP_2130	0.29	-4.1
2,430,623	+		PP_2130	0.32	-2.2
2,430,789	-		PP_2130	0.41	-1.8
2,430,818	+		PP_2130	0.42	-2.1
2,430,818	+		PP_2130	0.42	-1.1
2,430,819	-		PP_2130	0.42	-1.3
2,430,879	-		PP_2130	0.45	-1.3
2,430,879	-		PP_2130	0.45	-1.3
2,430,879	-		PP_2130	0.45	-3.7
2,430,933	-		PP_2130	0.48	-1.8
2,431,047	-		PP_2130	0.54	-1.5
2,431,125	-		PP_2130	0.58	-2.0
2,431,331	+		PP_2130	0.68	-1.7
2,431,332	-		PP_2130	0.68	-1.8
2,431,332	-		PP_2130	0.68	-1.1
2,431,475	+		PP_2130	0.76	-3.1
2,431,476	-		PP_2130	0.76	-3.0
2,431,508	+		PP_2130	0.77	-1.0
2,431,556	+		PP_2130	0.80	-1.9
2,431,556	+				-0.1
2,431,556	+		PP_2130	0.80	-0.1
2,431,557	-		PP_2130	0.80	-1.6
2,431,560	-		PP_2130	0.80	-1.5
2,431,560	-		PP_2130	0.80	-2.4
2,431,573	-		PP_2130	0.81	-1.6
2,431,721	+		PP_2130	0.88	-3.6
2,431,721	+		PP_2130	0.88	+0.0
2,431,758	-		PP_2130	0.90	-0.6
2,431,767	-				-2.1
2,431,811	+				-1.7
2,431,811	+				-1.3
2,431,811	+				-1.5
2,431,812	-				-0.9
2,431,814	+				-3.5
2,431,814	+				-3.4
2,431,815	-				+0.9
2,431,815	-				-0.9
2,431,815	-				-0.9
2,431,887	+				-3.1
2,431,887	+				-1.2
2,431,887	+				-1.7
2,431,888	-				-1.2
2,431,888	-				-1.8
2,431,891	+				-1.1
2,431,891	+				-0.4
2,431,892	-				-0.9
2,431,892	-				-0.7
2,431,892	-				+1.5
2,431,892	-				-2.2
2,431,892	-				+0.1
2,431,911	+				-2.0
2,431,911	+				-2.4
2,431,911	+				-2.1
2,431,911	+				-1.4
2,431,912	-				-0.9
2,431,912	-				+0.5
2,431,958	-				+0.5
2,431,968	-				+0.8
2,431,975	+				-1.9
2,431,976	-				-1.8
2,431,980	+				-2.1
2,432,018	+				-2.4
2,432,019	-				+0.2
2,432,029	+				-1.5
2,432,029	+				-1.1
2,432,029	+				-1.0
2,432,029	+				-0.3
2,432,030	-				-0.9
2,432,030	-				+0.5
2,432,098	+				-0.4
2,432,099	-				+0.6
2,432,736	+		PP_2131	0.31	+0.4
2,432,736	+		PP_2131	0.31	+0.6