Strain Fitness in Pseudomonas putida KT2440 around PP_1918

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,160,327	-				+1.4
2,160,471	-		PP_1917	0.25	+0.4
2,160,471	-		PP_1917	0.25	+1.6
2,160,523	+		PP_1917	0.32	+0.5
2,160,536	+		PP_1917	0.33	+1.0
2,160,537	-		PP_1917	0.34	+1.2
2,160,786	+		PP_1917	0.64	+0.0
2,160,787	-		PP_1917	0.64	-0.0
2,160,787	-		PP_1917	0.64	-1.5
2,160,788	+		PP_1917	0.64	+0.2
2,160,788	+		PP_1917	0.64	-0.6
2,160,788	+		PP_1917	0.64	+1.2
2,160,788	+		PP_1917	0.64	+1.7
2,160,788	+		PP_1917	0.64	+0.3
2,160,788	+		PP_1917	0.64	-0.2
2,160,788	+		PP_1917	0.64	-0.0
2,160,789	-		PP_1917	0.64	+0.5
2,160,789	-		PP_1917	0.64	+0.7
2,160,901	+		PP_1917	0.78	+0.6
2,161,002	+				+0.4
2,161,011	+				+0.5
2,161,039	+				+0.5
2,161,066	-				+0.1
2,161,091	+				+0.4
2,161,091	+				+0.1
2,161,092	-				+1.5
2,161,229	+		PP_1918	0.14	+1.0
2,161,248	+		PP_1918	0.15	+0.4
2,161,248	+		PP_1918	0.15	+0.2
2,161,249	-		PP_1918	0.15	+0.9
2,161,299	+		PP_1918	0.19	+0.5
2,161,353	-		PP_1918	0.24	+0.8
2,161,414	-		PP_1918	0.29	+0.9
2,161,414	-		PP_1918	0.29	-1.1
2,161,490	+		PP_1918	0.35	+0.5
2,161,491	-		PP_1918	0.35	-0.8
2,161,579	-		PP_1918	0.42	+0.8
2,161,579	-		PP_1918	0.42	+0.1
2,161,579	-		PP_1918	0.42	+0.5
2,161,626	+		PP_1918	0.45	+0.6
2,161,626	+		PP_1918	0.45	+1.6
2,161,626	+		PP_1918	0.45	+0.7
2,161,626	+		PP_1918	0.45	+0.4
2,161,627	-		PP_1918	0.45	+0.6
2,161,627	-		PP_1918	0.45	+1.4
2,161,627	-		PP_1918	0.45	+1.5
2,161,627	-		PP_1918	0.45	-0.7
2,161,687	-		PP_1918	0.50	+0.0
2,161,698	+		PP_1918	0.51	+0.9
2,161,699	-		PP_1918	0.51	+2.0
2,161,726	+		PP_1918	0.53	+1.9
2,161,799	+		PP_1918	0.59	+0.4
2,161,800	-		PP_1918	0.59	+1.1
2,161,827	-		PP_1918	0.61	+1.4
2,161,830	+		PP_1918	0.61	+1.0
2,161,830	+		PP_1918	0.61	+1.1
2,161,830	+		PP_1918	0.61	+1.3
2,161,830	+		PP_1918	0.61	+2.0
2,161,831	-		PP_1918	0.61	+1.3
2,161,831	-		PP_1918	0.61	+0.6
2,161,831	-		PP_1918	0.61	+0.9
2,161,848	+		PP_1918	0.63	+1.4
2,161,848	+		PP_1918	0.63	-0.1
2,161,848	+				+2.6
2,161,849	-		PP_1918	0.63	+1.6
2,161,887	-		PP_1918	0.66	+1.2
2,161,893	+		PP_1918	0.66	+1.2
2,161,893	+		PP_1918	0.66	-0.4
2,161,893	+		PP_1918	0.66	+0.4
2,161,893	+				-0.2
2,161,893	+		PP_1918	0.66	+1.3
2,161,894	-		PP_1918	0.66	-0.2
2,161,894	-		PP_1918	0.66	+1.1
2,161,902	+		PP_1918	0.67	+1.4
2,161,902	+		PP_1918	0.67	+1.5
2,161,902	+		PP_1918	0.67	+1.3
2,161,902	+		PP_1918	0.67	+0.7
2,161,903	-		PP_1918	0.67	+0.5
2,161,903	-		PP_1918	0.67	+0.4
2,161,903	-		PP_1918	0.67	+0.4
2,162,094	+		PP_1918	0.82	-1.6
2,162,316	+				+0.6
2,162,316	+				+0.1
2,162,316	+				-1.8
2,162,316	+				-0.1
2,162,317	-				+0.8
2,162,317	-				+0.2
2,162,342	+				+1.0
2,162,343	-				-0.1
2,162,345	+				+0.7
2,162,345	+				+1.3
2,162,346	-				+0.9
2,162,346	-				-0.4
2,162,454	-				-0.7
2,162,630	-				+0.3
2,162,632	-				+0.3
2,162,632	-				+0.3
2,162,640	-				+0.1
2,162,723	-				-2.4
2,162,723	-				+0.9
2,162,737	+				+0.7
2,162,807	-				+0.5
2,162,873	+				+0.8
2,162,873	+				+0.6
2,162,873	+				-1.0
2,162,874	-				+0.3
2,162,902	+				-0.2
2,162,902	+				+0.2
2,162,902	+				+0.5
2,162,930	+				-0.1
2,162,930	+				-2.6
2,162,930	+				-0.5
2,162,931	-				-1.3
2,162,931	-				-1.6
2,162,937	+				+0.4
2,162,937	+				+0.6
2,162,937	+				-2.7
2,162,937	+				+0.1
2,162,937	+				-1.2
2,162,938	-				-0.2
2,162,938	-				-0.5
2,162,938	-				+0.4
2,162,939	+				-0.8
2,162,939	+				-0.0
2,162,939	+				+0.5
2,162,939	+				-1.0
2,162,939	+				-3.1
2,162,940	-				+1.5
2,162,940	-				+1.3
2,162,940	-				+0.3
2,162,940	-				+0.6
2,162,940	-				+0.1
2,162,940	-				-0.3
2,162,940	-				+0.2
2,162,940	-				-2.7
2,162,965	+				+0.2
2,163,011	+				+0.9
2,163,011	+				+0.5
2,163,011	+				-1.1
2,163,113	+				+0.0
2,163,114	-				-0.3
2,163,114	-				+1.6
2,163,114	-				-1.1
2,163,161	-				+0.4
2,163,188	-				-1.9
2,163,202	-				+0.0
2,163,205	+				+0.5
2,163,206	-				+1.9
2,163,225	+				+0.5
2,163,225	+				+1.0
2,163,225	+				-1.3