Strain Fitness in Pseudomonas putida KT2440 around PP_1862

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,082,394	+		PP_1861	0.12	+0.4
2,082,401	+		PP_1861	0.13	+0.4
2,082,473	+		PP_1861	0.20	-0.1
2,082,474	-		PP_1861	0.20	-2.0
2,082,505	+		PP_1861	0.24	-0.3
2,082,505	+		PP_1861	0.24	-0.9
2,082,505	+		PP_1861	0.24	+0.5
2,082,506	-		PP_1861	0.24	-0.3
2,082,506	-		PP_1861	0.24	+0.6
2,082,506	-		PP_1861	0.24	-0.5
2,082,506	-		PP_1861	0.24	+0.8
2,082,506	-		PP_1861	0.24	-1.7
2,082,507	+		PP_1861	0.24	+1.0
2,082,507	+		PP_1861	0.24	-1.6
2,082,705	-		PP_1861	0.45	-1.2
2,082,737	+		PP_1861	0.48	-0.3
2,082,737	+		PP_1861	0.48	+0.2
2,082,738	-		PP_1861	0.48	-0.3
2,082,738	-		PP_1861	0.48	-0.4
2,082,738	-		PP_1861	0.48	-1.2
2,083,210	+				-0.2
2,083,307	+				+1.2
2,083,365	+				-0.5
2,083,365	+				-0.4
2,083,365	+				+1.2
2,083,366	-				+0.5
2,083,366	-				+1.5
2,083,366	-				-0.5
2,083,366	-				+0.4
2,083,367	+				+0.0
2,083,820	-		PP_1862	0.63	+1.5
2,083,820	-		PP_1862	0.63	+0.4
2,083,853	+		PP_1862	0.67	-0.2
2,083,901	+		PP_1862	0.74	+0.5
2,083,924	-		PP_1862	0.77	+0.5
2,084,033	-				-0.1
2,084,187	+				+0.9
2,084,187	+				+0.8
2,084,188	-				+0.3
2,084,203	+				+0.5
2,084,203	+				+0.2
2,084,204	-				+0.2
2,084,204	-				-0.5
2,084,204	-				-0.4
2,084,204	-				-0.8
2,084,345	+		PP_1863	0.26	+2.0
2,084,346	-		PP_1863	0.26	-0.4
2,084,346	-		PP_1863	0.26	-0.1
2,084,346	-		PP_1863	0.26	-0.8
2,084,346	-		PP_1863	0.26	-0.7
2,084,352	+		PP_1863	0.27	+0.9
2,084,352	+		PP_1863	0.27	+0.0
2,084,353	-		PP_1863	0.27	-0.2
2,084,612	+		PP_1863	0.57	-0.5
2,084,756	+		PP_1863	0.74	-1.2
2,084,757	-		PP_1863	0.74	+0.4
2,084,768	-		PP_1863	0.75	-1.1
2,084,768	-		PP_1863	0.75	+0.8
2,084,768	-		PP_1863	0.75	-0.0
2,084,815	+		PP_1863	0.81	-0.1
2,084,815	+		PP_1863	0.81	+0.5
2,084,815	+		PP_1863	0.81	+0.8
2,084,816	-		PP_1863	0.81	-0.0
2,084,816	-		PP_1863	0.81	+0.7
2,084,904	+				+0.7
2,084,966	+				-0.6