Strain Fitness in Pseudomonas putida KT2440 around PP_1805

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
2,027,275	-				-0.2
2,027,315	+		PP_1804	0.10	-1.1
2,027,315	+		PP_1804	0.10	+0.5
2,027,315	+		PP_1804	0.10	-2.5
2,027,325	-		PP_1804	0.11	+0.0
2,027,465	-		PP_1804	0.25	+0.5
2,027,628	+		PP_1804	0.41	-1.2
2,027,628	+		PP_1804	0.41	-0.7
2,027,629	-		PP_1804	0.42	-1.1
2,027,727	+		PP_1804	0.51	-2.0
2,027,728	-		PP_1804	0.51	+0.3
2,027,771	-		PP_1804	0.56	+0.2
2,027,771	-		PP_1804	0.56	+0.1
2,027,771	-		PP_1804	0.56	+1.1
2,027,822	+		PP_1804	0.61	+0.1
2,027,823	-		PP_1804	0.61	+2.2
2,027,823	-		PP_1804	0.61	+1.0
2,027,906	-		PP_1804	0.69	+0.6
2,027,908	+		PP_1804	0.69	-1.2
2,027,909	-		PP_1804	0.69	+1.3
2,027,924	-		PP_1804	0.71	-1.6
2,027,926	+		PP_1804	0.71	-0.8
2,027,926	+		PP_1804	0.71	-1.6
2,027,939	-		PP_1804	0.72	+0.1
2,027,997	+		PP_1804	0.78	-3.2
2,027,998	-		PP_1804	0.78	-0.3
2,028,021	+		PP_1804	0.81	-2.8
2,028,022	-		PP_1804	0.81	+1.5
2,028,022	-		PP_1804	0.81	+1.2
2,028,022	-		PP_1804	0.81	-0.2
2,028,022	-		PP_1804	0.81	+0.1
2,028,027	+		PP_1804	0.81	-1.6
2,028,080	+		PP_1804	0.86	+0.4
2,028,084	-		PP_1804	0.87	+2.2
2,028,084	-		PP_1804	0.87	+1.3
2,028,119	-				+1.6
2,028,162	+				-2.0
2,028,162	+				-2.9
2,028,163	-				+1.2
2,028,176	-				+0.8
2,028,192	+				-3.6
2,028,192	+				-0.3
2,028,193	-				+1.2
2,028,193	-				+0.8
2,028,214	-				+1.7
2,028,214	-				+1.7
2,028,214	-				+0.4
2,028,214	-				+1.2
2,028,214	-				+1.5
2,028,240	+				-0.3
2,028,241	-				+2.9
2,028,241	-				+1.1
2,028,241	-				+1.4
2,028,351	+				+1.2
2,028,352	-				+1.2
2,028,355	+				+1.4
2,028,355	+				+1.2
2,028,355	+				+1.2
2,028,355	+				+0.7
2,028,355	+				+1.3
2,028,355	+				+0.5
2,028,356	-				+1.4
2,028,356	-				+0.2
2,028,356	-				+0.6
2,028,356	-				+1.2
2,028,356	-				+0.8
2,028,359	+				+1.1
2,028,359	+				+1.3
2,028,359	+				+1.2
2,028,359	+				+1.5
2,028,359	+				+1.6
2,028,359	+				+1.3
2,028,360	-				-0.3
2,028,360	-				+1.5
2,028,427	+				+0.0
2,028,441	-				-0.4
2,028,468	+		PP_1805	0.10	+1.5
2,028,469	-		PP_1805	0.10	+0.6
2,028,517	+		PP_1805	0.12	+1.9
2,028,517	+		PP_1805	0.12	+0.7
2,028,549	+		PP_1805	0.14	+1.2
2,028,550	-		PP_1805	0.14	-0.4
2,028,550	-		PP_1805	0.14	+1.3
2,028,596	+		PP_1805	0.16	+1.7
2,028,597	-		PP_1805	0.16	+0.6
2,028,642	+		PP_1805	0.18	+0.9
2,028,642	+		PP_1805	0.18	+1.1
2,028,643	-		PP_1805	0.18	+0.2
2,028,643	-		PP_1805	0.18	+0.2
2,028,643	-		PP_1805	0.18	+0.5
2,028,664	+		PP_1805	0.19	+1.7
2,028,664	+		PP_1805	0.19	+0.3
2,028,693	+		PP_1805	0.21	+1.1
2,028,693	+		PP_1805	0.21	+1.1
2,028,693	+		PP_1805	0.21	+0.5
2,028,693	+		PP_1805	0.21	-0.8
2,028,693	+		PP_1805	0.21	-0.5
2,028,694	-		PP_1805	0.21	+0.8
2,028,727	+		PP_1805	0.23	+1.3
2,028,728	-		PP_1805	0.23	+0.4
2,028,747	+		PP_1805	0.24	+1.2
2,028,784	+		PP_1805	0.25	+1.5
2,028,785	-		PP_1805	0.25	+0.6
2,028,821	-		PP_1805	0.27	+0.6
2,028,828	+		PP_1805	0.27	+0.0
2,028,828	+		PP_1805	0.27	+1.4
2,028,828	+		PP_1805	0.27	+0.7
2,028,829	-		PP_1805	0.27	+1.3
2,028,829	-		PP_1805	0.27	+1.3
2,028,829	-		PP_1805	0.27	+1.4
2,028,829	-		PP_1805	0.27	+1.1
2,028,829	-		PP_1805	0.27	+0.3
2,028,829	-		PP_1805	0.27	+0.5
2,028,829	-		PP_1805	0.27	-0.7
2,028,829	-		PP_1805	0.27	+0.8
2,028,829	-		PP_1805	0.27	+1.8
2,028,954	+		PP_1805	0.34	+0.8
2,028,954	+		PP_1805	0.34	+0.7
2,028,954	+		PP_1805	0.34	+1.6
2,028,955	-		PP_1805	0.34	-0.8
2,028,955	-		PP_1805	0.34	+0.8
2,029,285	+		PP_1805	0.50	+0.2
2,029,286	-		PP_1805	0.50	+1.4
2,029,286	-		PP_1805	0.50	+1.1
2,029,329	+		PP_1805	0.52	+0.7
2,029,330	-		PP_1805	0.52	+1.3
2,029,330	-		PP_1805	0.52	+1.7
2,029,338	+		PP_1805	0.52	+1.0
2,029,338	+		PP_1805	0.52	+1.0
2,029,338	+		PP_1805	0.52	+0.0
2,029,338	+		PP_1805	0.52	+0.4
2,029,339	-		PP_1805	0.52	+0.3
2,029,445	+		PP_1805	0.57	+0.6
2,029,445	+		PP_1805	0.57	+0.4
2,029,445	+		PP_1805	0.57	-1.5
2,029,445	+		PP_1805	0.57	+0.0
2,029,445	+		PP_1805	0.57	+0.8
2,029,446	-		PP_1805	0.57	+0.6
2,029,474	-		PP_1805	0.59	+1.1
2,029,474	-		PP_1805	0.59	+1.3
2,029,474	-		PP_1805	0.59	+0.0
2,029,529	+		PP_1805	0.61	+1.4
2,029,529	+		PP_1805	0.61	+1.2
2,029,530	-		PP_1805	0.61	+0.7
2,029,530	-		PP_1805	0.61	+0.2
2,029,532	-		PP_1805	0.61	+0.6
2,029,532	-		PP_1805	0.61	+0.6
2,029,532	-		PP_1805	0.61	+1.4
2,029,532	-		PP_1805	0.61	+0.3
2,029,532	-		PP_1805	0.61	+0.2
2,029,532	-		PP_1805	0.61	+0.9
2,029,532	-		PP_1805	0.61	+0.5
2,029,604	+		PP_1805	0.65	+1.3
2,029,604	+		PP_1805	0.65	-0.1
2,029,605	-		PP_1805	0.65	+1.0
2,029,684	+		PP_1805	0.69	+0.8
2,029,684	+				+0.8
2,029,710	+		PP_1805	0.70	+1.1
2,029,710	+		PP_1805	0.70	+1.0
2,029,710	+		PP_1805	0.70	+0.7
2,029,710	+		PP_1805	0.70	+1.4
2,029,710	+		PP_1805	0.70	+1.0
2,029,711	-		PP_1805	0.70	+0.5
2,029,711	-		PP_1805	0.70	+0.9
2,029,711	-		PP_1805	0.70	+1.2
2,029,841	+		PP_1805	0.76	+0.5
2,029,842	-		PP_1805	0.76	+1.6
2,029,842	-		PP_1805	0.76	+1.7
2,029,842	-		PP_1805	0.76	+1.4
2,029,842	-		PP_1805	0.76	+1.8
2,029,842	-		PP_1805	0.76	-0.1
2,029,862	+		PP_1805	0.77	+1.5
2,029,881	-		PP_1805	0.78	+1.1
2,029,881	-		PP_1805	0.78	+1.4
2,029,939	+		PP_1805	0.81	+0.5
2,029,939	+		PP_1805	0.81	-0.8
2,029,939	+		PP_1805	0.81	+1.4
2,029,940	-		PP_1805	0.81	+0.6
2,029,940	-		PP_1805	0.81	+0.8
2,029,940	-		PP_1805	0.81	+1.5
2,029,940	-		PP_1805	0.81	+0.3
2,030,013	-		PP_1805	0.85	+0.8
2,030,017	+		PP_1805	0.85	+1.0
2,030,017	+		PP_1805	0.85	+0.7
2,030,017	+		PP_1805	0.85	+1.0
2,030,017	+		PP_1805	0.85	+1.1
2,030,018	-		PP_1805	0.85	+1.2
2,030,018	-		PP_1805	0.85	+0.8
2,030,021	+		PP_1805	0.85	+1.8
2,030,022	-				+3.1
2,030,160	+				-0.0
2,030,161	-				+1.9
2,030,161	-				+0.4
2,030,161	-				+0.9
2,030,161	-				+1.5
2,030,189	+				-1.0
2,030,189	+				+0.3
2,030,190	-				+0.5
2,030,190	-				+1.1
2,030,190	-				+2.1
2,030,200	+				+1.1
2,030,201	-				+1.2
2,030,257	+				+1.7
2,030,257	+				+1.7
2,030,258	-				+1.6
2,030,268	+				+2.7
2,030,269	-				+1.8
2,030,521	-		PP_1806	0.15	+0.5
2,030,571	+		PP_1806	0.21	-0.6
2,030,572	-		PP_1806	0.21	-0.3
2,030,665	+		PP_1806	0.31	-0.2
2,030,666	-		PP_1806	0.31	-0.6
2,030,790	+		PP_1806	0.44	+0.4
2,030,791	-		PP_1806	0.44	-1.4
2,030,821	-		PP_1806	0.47	-1.3
2,030,969	+		PP_1806	0.62	-0.1
2,031,081	+		PP_1806	0.74	+0.4
2,031,096	+		PP_1806	0.76	-0.4
2,031,161	+		PP_1806	0.82	+0.9
2,031,229	+		PP_1806	0.90	+0.3
2,031,229	+		PP_1806	0.90	-0.1
2,031,229	+		PP_1806	0.90	+0.3
2,031,229	+		PP_1806	0.90	-0.2
2,031,229	+		PP_1806	0.90	+1.0
2,031,230	-		PP_1806	0.90	-0.1
2,031,230	-		PP_1806	0.90	-0.2