Strain Fitness in Pseudomonas putida KT2440 around PP_1444

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,644,053	-		PP_1443	0.72	-1.0
1,644,182	+		PP_1443	0.77	-1.4
1,644,182	+		PP_1443	0.77	-0.7
1,644,183	-		PP_1443	0.77	-0.8
1,644,203	+		PP_1443	0.78	+0.7
1,644,223	+		PP_1443	0.79	-1.1
1,644,224	-		PP_1443	0.79	+0.1
1,644,224	-		PP_1443	0.79	+0.3
1,644,299	+		PP_1443	0.82	+0.3
1,644,300	-		PP_1443	0.82	+0.7
1,644,317	+		PP_1443	0.82	+0.0
1,644,620	+				-1.0
1,644,620	+				-0.1
1,644,620	+				-1.1
1,644,621	-				-0.3
1,644,621	-				+1.0
1,644,621	-				-1.6
1,644,762	+				-0.3
1,644,762	+				-1.0
1,644,762	+				-2.6
1,644,762	+				-0.2
1,644,762	+				-1.3
1,644,762	+				-1.2
1,644,763	-				-0.1
1,644,763	-				-0.1
1,644,763	-				-1.2
1,644,771	+				-0.4
1,644,771	+				+0.8
1,644,771	+				-3.9
1,644,771	+				-1.0
1,644,771	+				-0.3
1,644,771	+				+0.1
1,644,772	-				+0.0
1,644,772	-				-0.4
1,644,772	-				+0.7
1,644,772	-				-0.0
1,644,772	-				+0.2
1,644,772	-				+0.2
1,644,772	-				+0.7
1,644,772	-				+1.2
1,644,772	-				+0.2
1,644,865	+				+0.2
1,644,865	+				-1.1
1,644,866	-				+0.3
1,644,946	+				-1.1
1,644,961	+				-1.4
1,644,973	+				-0.8
1,644,974	-				-0.8
1,644,974	-				-3.8
1,644,974	-				-0.5
1,645,027	+				-2.9
1,645,027	+				-1.8
1,645,027	+				-0.5
1,645,027	+				-1.9
1,645,027	+				-0.6
1,645,028	-				-1.3
1,645,051	+				-3.5
1,645,051	+				-1.4
1,645,051	+				-3.0
1,645,065	-				-1.8
1,645,123	+				-0.8
1,645,123	+				-3.8
1,645,123	+				+0.5
1,645,136	-				-1.1
1,645,136	-				-1.4
1,645,136	-				-1.6
1,645,306	+		PP_1444	0.15	-1.3
1,645,307	-		PP_1444	0.15	-3.3
1,645,333	-		PP_1444	0.16	-3.0
1,645,333	-		PP_1444	0.16	-1.2
1,645,373	-		PP_1444	0.18	-0.9
1,645,474	+		PP_1444	0.22	-2.2
1,645,474	+		PP_1444	0.22	+0.7
1,645,474	+		PP_1444	0.22	-1.8
1,645,475	-		PP_1444	0.22	-2.0
1,645,475	-		PP_1444	0.22	-0.9
1,645,537	-		PP_1444	0.25	-3.5
1,645,537	-		PP_1444	0.25	-1.5
1,645,537	-		PP_1444	0.25	-2.2
1,645,537	-		PP_1444	0.25	-2.5
1,645,588	+		PP_1444	0.27	-0.5
1,645,588	+		PP_1444	0.27	-1.5
1,645,785	-		PP_1444	0.35	-0.6
1,645,807	+		PP_1444	0.36	-1.1
1,645,808	-				-1.1
1,645,830	+		PP_1444	0.37	-2.9
1,645,872	+		PP_1444	0.38	+0.1
1,645,873	-		PP_1444	0.38	-1.9
1,645,930	+		PP_1444	0.41	-1.5
1,646,050	+		PP_1444	0.46	-2.2
1,646,050	+		PP_1444	0.46	-0.8
1,646,051	-		PP_1444	0.46	-1.6
1,646,051	-		PP_1444	0.46	-0.9
1,646,156	+		PP_1444	0.50	-2.3
1,646,156	+		PP_1444	0.50	-1.3
1,646,156	+		PP_1444	0.50	-0.9
1,646,299	+		PP_1444	0.56	-1.3
1,646,300	-		PP_1444	0.56	-0.4
1,646,302	+		PP_1444	0.56	-0.8
1,646,303	-		PP_1444	0.56	-1.6
1,646,303	-		PP_1444	0.56	-2.0
1,646,303	-		PP_1444	0.56	-0.6
1,646,303	-		PP_1444	0.56	-4.1
1,646,428	+		PP_1444	0.61	-0.8
1,646,524	+		PP_1444	0.65	-1.6
1,646,525	-		PP_1444	0.66	-1.2
1,646,525	-		PP_1444	0.66	-2.2
1,646,527	+		PP_1444	0.66	-0.7
1,646,527	+		PP_1444	0.66	-1.2
1,646,528	-		PP_1444	0.66	-1.8
1,646,599	+		PP_1444	0.69	-2.3
1,646,665	+		PP_1444	0.71	-1.7
1,646,810	-		PP_1444	0.77	-2.4
1,647,105	+		PP_1444	0.90	-0.7
1,647,106	-		PP_1444	0.90	-3.9
1,647,151	+				-1.2
1,647,226	+				-0.1
1,647,226	+				+0.7
1,647,227	-				-2.6
1,647,227	-				-1.0
1,647,227	-				-2.7
1,647,229	+				-2.9
1,647,229	+				-1.1
1,647,229	+				-3.6
1,647,230	-				-0.5
1,647,230	-				-3.3
1,647,230	-				-2.0
1,647,359	+				+0.4
1,647,359	+				-0.9
1,647,359	+				-0.8
1,647,359	+				-1.5
1,647,359	+				-0.3
1,647,360	-				-0.1
1,647,360	-				-1.5
1,647,360	-				-1.3
1,647,463	+				-0.5
1,647,464	-				-1.5
1,647,464	-				+2.0
1,647,514	+				-0.3
1,647,514	+				-0.8
1,647,530	-		PP_1445	0.11	-1.0
1,647,569	-		PP_1445	0.14	-0.2
1,647,569	-		PP_1445	0.14	-0.7
1,647,574	+		PP_1445	0.14	-1.5
1,647,575	-		PP_1445	0.14	-1.7
1,647,575	-		PP_1445	0.14	-0.5
1,647,712	+		PP_1445	0.24	+0.0
1,647,712	+		PP_1445	0.24	-2.3
1,647,712	+		PP_1445	0.24	-0.8
1,647,713	-		PP_1445	0.24	+0.8
1,647,713	-		PP_1445	0.24	+1.2
1,647,713	-		PP_1445	0.24	+1.6
1,647,713	-		PP_1445	0.24	+2.1
1,647,713	-		PP_1445	0.24	+0.8
1,647,920	+		PP_1445	0.40	-0.2
1,647,921	-		PP_1445	0.40	+0.3
1,647,921	-		PP_1445	0.40	-0.2
1,647,921	-		PP_1445	0.40	-0.6
1,647,925	+		PP_1445	0.40	+0.3
1,647,926	-		PP_1445	0.40	-1.6
1,647,928	+		PP_1445	0.41	+0.2
1,647,928	+		PP_1445	0.41	-0.6
1,647,928	+		PP_1445	0.41	-2.8
1,647,929	-		PP_1445	0.41	+0.7
1,647,929	-		PP_1445	0.41	+1.2
1,647,929	-		PP_1445	0.41	-2.5
1,647,929	-		PP_1445	0.41	+0.1
1,647,931	+		PP_1445	0.41	+0.2
1,647,931	+		PP_1445	0.41	-2.4
1,647,944	-		PP_1445	0.42	-1.1
1,647,965	+		PP_1445	0.43	-0.4
1,647,966	-		PP_1445	0.43	-0.1
1,647,966	-		PP_1445	0.43	-0.3
1,647,966	-		PP_1445	0.43	+1.1
1,647,966	-		PP_1445	0.43	-0.3
1,647,978	+		PP_1445	0.44	+0.9
1,647,978	+		PP_1445	0.44	-0.8
1,648,087	+		PP_1445	0.52	+0.8
1,648,087	+		PP_1445	0.52	+0.1
1,648,088	-		PP_1445	0.53	+1.2
1,648,101	-		PP_1445	0.53	+0.3
1,648,108	+		PP_1445	0.54	-0.1
1,648,108	+		PP_1445	0.54	+0.1
1,648,108	+		PP_1445	0.54	+0.2
1,648,109	-		PP_1445	0.54	+0.2
1,648,280	-		PP_1445	0.67	-1.3