Strain Fitness in Pseudomonas putida KT2440 around PP_1152

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,317,799	+		PP_1150	0.61	-3.3
1,317,952	-		PP_1150	0.69	-4.6
1,317,952	-		PP_1150	0.69	-3.7
1,317,952	-		PP_1150	0.69	-4.2
1,317,952	-		PP_1150	0.69	-4.0
1,317,952	-		PP_1150	0.69	-3.4
1,318,237	+		PP_1150	0.83	-4.1
1,318,363	-		PP_1150	0.89	-2.9
1,318,504	+				-4.6
1,318,505	-				-4.3
1,318,612	+		PP_1151	0.26	-3.2
1,318,612	+		PP_1151	0.26	-2.0
1,318,612	+		PP_1151	0.26	-3.4
1,318,612	+		PP_1151	0.26	-3.6
1,318,613	-		PP_1151	0.27	-3.9
1,318,613	-		PP_1151	0.27	-4.0
1,318,742	+		PP_1151	0.89	-2.3
1,318,742	+		PP_1151	0.89	-4.4
1,318,743	-		PP_1151	0.89	-3.1
1,318,743	-		PP_1151	0.89	-4.7
1,318,743	-		PP_1151	0.89	-1.4
1,318,760	+				-2.7
1,318,760	+				-1.8
1,318,761	-				-2.1
1,318,761	-				-2.2
1,318,763	-				-0.4
1,318,791	-				-3.9
1,318,794	+				-3.5
1,318,794	+				-3.2
1,318,794	+				-0.9
1,318,795	-				-3.9
1,318,795	-				-4.3
1,318,795	-				-4.6
1,318,795	-				-3.9
1,318,795	-				-3.7
1,318,855	+				-4.8
1,318,856	-				-3.8
1,318,858	+				-4.8
1,318,858	+				-4.2
1,318,858	+				-2.3
1,318,858	+				-4.2
1,318,858	+				-4.1
1,318,858	+				-4.0
1,318,858	+				-4.8
1,318,859	-				-3.1
1,318,859	-				-1.9
1,318,859	-				-2.6
1,318,859	-				-4.3
1,318,859	-				-4.9
1,318,859	-				-4.9
1,318,859	-				-4.0
1,318,859	-				-1.7
1,318,859	-				-4.7
1,318,859	-				-4.3
1,318,859	-				-3.5
1,318,859	-				-3.7
1,318,995	+		PP_1152	0.25	-4.1
1,318,995	+		PP_1152	0.25	-2.7
1,318,995	+		PP_1152	0.25	-3.9
1,318,995	+		PP_1152	0.25	-2.4
1,319,256	+		PP_1152	0.55	-4.8
1,319,256	+		PP_1152	0.55	-4.0
1,319,256	+		PP_1152	0.55	-4.0
1,319,257	-		PP_1152	0.55	-5.0
1,319,257	-		PP_1152	0.55	-3.7
1,319,287	+		PP_1152	0.59	-2.8
1,319,287	+				-0.2
1,319,288	-		PP_1152	0.59	-4.2
1,319,288	-		PP_1152	0.59	-3.7
1,319,288	-		PP_1152	0.59	-4.6
1,319,338	+		PP_1152	0.64	-3.5
1,319,338	+		PP_1152	0.64	-3.8
1,319,338	+		PP_1152	0.64	-3.7
1,319,339	-		PP_1152	0.65	-4.7
1,319,339	-		PP_1152	0.65	-3.2
1,319,339	-		PP_1152	0.65	-3.7
1,319,339	-		PP_1152	0.65	-4.6
1,319,339	-		PP_1152	0.65	-1.4
1,319,339	-		PP_1152	0.65	-4.9
1,319,546	+		PP_1152	0.88	-2.4
1,319,706	+				+0.6
1,319,707	-				-1.8
1,319,707	-				-0.9
1,319,762	+				+0.3
1,319,762	+				-0.4
1,319,787	-				-3.1
1,319,835	+		PP_1153	0.13	-0.2
1,319,926	+		PP_1153	0.40	-0.1
1,319,927	-		PP_1153	0.40	-2.0
1,319,927	-		PP_1153	0.40	-0.6
1,320,146	+				-0.5
1,320,147	-				-0.6
1,320,225	-				-0.9
1,320,227	+				+0.4
1,320,227	+				+0.8
1,320,227	+				-0.6
1,320,228	-				+0.5
1,320,426	+		PP_1154	0.11	-0.5
1,320,426	+		PP_1154	0.11	+0.1
1,320,427	-		PP_1154	0.11	-0.6
1,320,487	+		PP_1154	0.13	+0.9
1,320,514	+		PP_1154	0.14	-0.6
1,320,515	-		PP_1154	0.14	+0.4