Strain Fitness in Pseudomonas putida KT2440 around PP_1034

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
1,180,009	+		PP_1033	0.61	-0.4
1,180,058	-		PP_1033	0.64	-0.9
1,180,058	-		PP_1033	0.64	+0.5
1,180,178	+		PP_1033	0.70	+0.0
1,180,178	+		PP_1033	0.70	+0.2
1,180,201	+		PP_1033	0.71	+0.0
1,180,201	+		PP_1033	0.71	+0.2
1,180,201	+		PP_1033	0.71	-0.2
1,180,202	-		PP_1033	0.71	-0.2
1,180,202	-		PP_1033	0.71	+0.1
1,180,202	-		PP_1033	0.71	+1.1
1,180,203	+		PP_1033	0.71	+0.7
1,180,212	+		PP_1033	0.72	-0.8
1,180,212	+		PP_1033	0.72	-0.4
1,180,212	+		PP_1033	0.72	+0.8
1,180,213	-		PP_1033	0.72	-0.0
1,180,213	-		PP_1033	0.72	-0.0
1,180,249	-		PP_1033	0.73	+0.3
1,180,359	+		PP_1033	0.79	-0.4
1,180,359	+		PP_1033	0.79	+0.7
1,180,359	+		PP_1033	0.79	-0.3
1,180,359	+		PP_1033	0.79	+0.1
1,180,360	-		PP_1033	0.79	+0.1
1,180,360	-		PP_1033	0.79	+1.2
1,180,360	-		PP_1033	0.79	+1.3
1,180,360	-		PP_1033	0.79	+0.0
1,180,364	+		PP_1033	0.79	+1.2
1,180,364	+		PP_1033	0.79	+1.1
1,180,388	+		PP_1033	0.80	+0.6
1,180,394	+		PP_1033	0.81	-0.1
1,180,395	-		PP_1033	0.81	+0.0
1,180,395	-		PP_1033	0.81	-1.1
1,180,395	-		PP_1033	0.81	+0.2
1,180,461	+		PP_1033	0.84	+0.4
1,180,462	-		PP_1033	0.84	-0.3
1,180,483	+		PP_1033	0.85	-0.2
1,180,484	-		PP_1033	0.85	-0.4
1,180,506	+		PP_1033	0.86	-0.2
1,180,507	-		PP_1033	0.86	-0.7
1,180,520	+		PP_1033	0.87	+0.1
1,180,542	+		PP_1033	0.88	+0.8
1,180,542	+		PP_1033	0.88	+1.0
1,180,543	-		PP_1033	0.88	+0.0
1,180,582	-				-0.4
1,180,648	+				+0.8
1,180,648	+				-2.3
1,180,648	+				+1.6
1,180,649	-				+0.5
1,180,649	-				-0.7
1,180,649	-				-0.5
1,180,655	+				-0.4
1,180,656	-				+0.9
1,180,656	-				-1.3
1,180,682	+				-0.6
1,180,682	+				-0.3
1,180,682	+				-0.7
1,180,683	-				+0.9
1,180,683	-				+0.9
1,180,760	+				+0.8
1,180,766	+				-0.5
1,180,766	+				-1.1
1,180,886	+				+0.2
1,180,887	-				-4.5
1,180,887	-				-2.4
1,180,905	+				-0.2
1,181,027	+				-3.6
1,181,028	-				-0.4
1,181,028	-				-2.9
1,181,056	+				-3.2
1,181,057	-				-3.4
1,181,098	+		PP_1034	0.11	-1.2
1,181,098	+		PP_1034	0.11	-3.3
1,181,098	+		PP_1034	0.11	-2.3
1,181,098	+		PP_1034	0.11	-2.2
1,181,099	-		PP_1034	0.11	-2.1
1,181,306	-		PP_1034	0.25	-3.4
1,181,306	-		PP_1034	0.25	-1.8
1,181,306	-		PP_1034	0.25	-2.4
1,181,306	-		PP_1034	0.25	-1.7
1,181,377	+		PP_1034	0.30	-1.6
1,181,378	-		PP_1034	0.31	-3.2
1,181,378	-		PP_1034	0.31	-1.6
1,181,378	-		PP_1034	0.31	-1.8
1,181,378	-		PP_1034	0.31	-2.7
1,181,378	-		PP_1034	0.31	-2.8
1,181,378	-		PP_1034	0.31	-1.4
1,181,378	-		PP_1034	0.31	-2.5
1,181,383	+		PP_1034	0.31	-2.3
1,181,383	+		PP_1034	0.31	-2.8
1,181,383	+		PP_1034	0.31	-1.1
1,181,384	-		PP_1034	0.31	-2.2
1,181,384	-		PP_1034	0.31	-2.0
1,181,481	+		PP_1034	0.38	-1.2
1,181,481	+		PP_1034	0.38	-3.9
1,181,482	-		PP_1034	0.38	-2.3
1,181,663	+		PP_1034	0.51	-1.9
1,181,665	-		PP_1034	0.51	-2.1
1,181,665	-		PP_1034	0.51	-3.6
1,181,665	-		PP_1034	0.51	-2.5
1,181,674	+		PP_1034	0.52	-2.4
1,181,713	+		PP_1034	0.54	-1.0
1,181,714	-		PP_1034	0.54	-0.9
1,181,714	-		PP_1034	0.54	-1.9
1,181,714	-		PP_1034	0.54	-2.0
1,181,759	-		PP_1034	0.58	-2.2
1,181,781	+		PP_1034	0.59	-2.1
1,181,781	+		PP_1034	0.59	-4.3
1,181,782	-		PP_1034	0.59	-3.3
1,181,782	-		PP_1034	0.59	-2.0
1,181,782	-		PP_1034	0.59	-0.9
1,181,782	-		PP_1034	0.59	-2.3
1,182,051	+		PP_1034	0.78	-2.6
1,182,106	+		PP_1034	0.82	-2.1
1,182,106	+		PP_1034	0.82	-1.7
1,182,106	+		PP_1034	0.82	-2.7
1,182,107	-		PP_1034	0.82	-3.0
1,182,107	-		PP_1034	0.82	-1.3
1,182,120	+		PP_1034	0.83	-1.8
1,182,120	+		PP_1034	0.83	-2.0
1,182,226	+				-2.1
1,182,226	+				-3.2
1,182,226	+				-3.0
1,182,928	+				-0.3
1,182,929	-				-0.0
1,182,929	-				+0.2
1,182,929	-				+0.2
1,182,929	-				+0.6
1,182,929	-				+0.4
1,182,944	+				-0.3
1,183,042	+				+0.4
1,183,042	+				+0.3
1,183,043	-				-0.5
1,183,100	-		PP_1036	0.12	+0.4
1,183,100	-		PP_1036	0.12	-0.1
1,183,100	-		PP_1036	0.12	-0.6
1,183,100	-		PP_1036	0.12	-2.4
1,183,100	-		PP_1036	0.12	-1.3
1,183,115	-		PP_1036	0.13	-0.4
1,183,115	-		PP_1036	0.13	+0.4
1,183,234	+		PP_1036	0.21	+1.0
1,183,234	+		PP_1036	0.21	+0.5
1,183,234	+		PP_1036	0.21	-0.7
1,183,235	-		PP_1036	0.21	+1.4
1,183,310	-		PP_1036	0.26	+0.1