Strain Fitness in Pseudomonas putida KT2440 around PP_0760

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0759 and PP_0760 are separated by 45 nucleotidesPP_0760 and PP_0761 are separated by 268 nucleotides PP_0759: PP_0759 - conserved exported protein of unknown function, at 874,422 to 875,261 _0759 PP_0760: PP_0760 - conserved membrane protein of unknown function, at 875,307 to 875,891 _0760 PP_0761: PP_0761 - Ribosomal RNA small subunit methyltransferase C, at 876,160 to 877,158 _0761 Position (kb) 875 876Strain fitness (log2 ratio) -3 -2 -1 0 1at 874.326 kb on + strandat 874.326 kb on + strandat 874.327 kb on - strandat 874.385 kb on - strandat 874.410 kb on - strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.448 kb on + strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.449 kb on - strandat 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.511 kb on + strand, within PP_0759at 874.512 kb on - strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.551 kb on + strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.552 kb on - strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.593 kb on + strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.594 kb on - strand, within PP_0759at 874.606 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.813 kb on - strand, within PP_0759at 874.902 kb on - strand, within PP_0759at 874.926 kb on + strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 874.927 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.014 kb on - strand, within PP_0759at 875.172 kb on - strand, within PP_0759at 875.238 kb on + strandat 875.238 kb on + strandat 875.239 kb on - strandat 875.239 kb on - strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.259 kb on + strandat 875.260 kb on - strandat 875.309 kb on - strandat 875.341 kb on + strandat 875.341 kb on + strandat 875.463 kb on - strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.483 kb on + strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.484 kb on - strand, within PP_0760at 875.861 kb on + strandat 875.923 kb on + strandat 875.924 kb on - strandat 875.924 kb on - strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.932 kb on + strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.933 kb on - strandat 875.968 kb on + strandat 875.968 kb on + strandat 875.969 kb on - strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.058 kb on + strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.059 kb on - strandat 876.071 kb on - strandat 876.100 kb on + strandat 876.101 kb on - strandat 876.101 kb on - strandat 876.129 kb on + strandat 876.179 kb on + strandat 876.179 kb on + strandat 876.180 kb on - strandat 876.338 kb on + strand, within PP_0761at 876.346 kb on - strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.379 kb on + strand, within PP_0761at 876.380 kb on - strand, within PP_0761at 876.381 kb on + strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.382 kb on - strand, within PP_0761at 876.621 kb on + strand, within PP_0761at 876.621 kb on + strand, within PP_0761at 876.650 kb on - strand, within PP_0761at 876.863 kb on + strand, within PP_0761at 876.864 kb on - strand, within PP_0761

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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874,326 + +0.4
874,326 + -0.4
874,327 - +1.2
874,385 - +0.2
874,410 - +0.0
874,448 + -0.9
874,448 + -2.9
874,448 + +0.6
874,449 - -0.3
874,449 - -1.1
874,449 - +0.5
874,449 - -2.6
874,449 - -0.2
874,511 + PP_0759 0.11 +0.2
874,511 + PP_0759 0.11 +0.3
874,511 + PP_0759 0.11 -1.9
874,512 - PP_0759 0.11 -0.3
874,551 + PP_0759 0.15 -0.7
874,551 + PP_0759 0.15 -0.5
874,551 + PP_0759 0.15 +0.0
874,552 - PP_0759 0.15 -1.6
874,552 - PP_0759 0.15 -0.6
874,552 - PP_0759 0.15 -0.1
874,552 - PP_0759 0.15 +0.2
874,552 - PP_0759 0.15 -0.5
874,552 - PP_0759 0.15 -0.2
874,552 - PP_0759 0.15 -0.3
874,593 + PP_0759 0.20 +0.1
874,593 + PP_0759 0.20 -1.7
874,594 - PP_0759 0.20 +0.3
874,594 - PP_0759 0.20 -0.9
874,606 - PP_0759 0.22 -0.2
874,813 - PP_0759 0.47 +1.1
874,813 - PP_0759 0.47 -0.3
874,902 - PP_0759 0.57 -1.2
874,926 + PP_0759 0.60 -0.6
874,927 - PP_0759 0.60 +0.6
874,927 - PP_0759 0.60 +0.4
874,927 - PP_0759 0.60 -1.3
875,014 - PP_0759 0.70 -0.1
875,014 - PP_0759 0.70 -0.3
875,014 - PP_0759 0.70 +0.0
875,014 - PP_0759 0.70 +0.2
875,014 - PP_0759 0.70 -0.6
875,172 - PP_0759 0.89 +0.1
875,238 + -0.9
875,238 + +0.2
875,239 - -0.0
875,239 - -0.6
875,259 + +1.2
875,259 + -1.8
875,259 + -0.9
875,259 + -1.7
875,260 - +0.0
875,309 - +1.5
875,341 + -0.9
875,341 + +0.4
875,463 - PP_0760 0.27 -0.9
875,483 + PP_0760 0.30 -0.6
875,483 + PP_0760 0.30 -0.6
875,484 - PP_0760 0.30 -2.5
875,484 - PP_0760 0.30 -2.0
875,861 + -2.2
875,923 + -0.3
875,924 - -0.4
875,924 - +0.4
875,932 + +0.1
875,932 + -2.4
875,932 + +0.6
875,932 + -0.6
875,932 + -2.6
875,933 - +0.6
875,933 - +0.2
875,933 - -0.3
875,933 - -0.8
875,933 - +0.2
875,933 - +0.4
875,933 - +0.7
875,968 + -0.3
875,968 + -1.3
875,969 - +0.5
876,058 + -0.4
876,058 + -0.4
876,058 + -1.5
876,058 + -0.4
876,058 + -1.3
876,058 + -0.3
876,058 + -2.9
876,058 + -2.4
876,059 - +0.6
876,059 - +0.0
876,059 - +0.1
876,059 - -0.8
876,059 - +0.7
876,071 - -0.2
876,100 + -2.6
876,101 - -0.3
876,101 - +1.0
876,129 + -1.7
876,179 + +0.3
876,179 + -0.1
876,180 - -1.0
876,338 + PP_0761 0.18 -0.8
876,346 - PP_0761 0.19 -0.2
876,379 + PP_0761 0.22 +1.1
876,379 + PP_0761 0.22 -1.4
876,379 + PP_0761 0.22 -0.0
876,379 + PP_0761 0.22 -2.0
876,380 - PP_0761 0.22 +0.3
876,381 + PP_0761 0.22 +0.1
876,382 - PP_0761 0.22 +0.2
876,382 - PP_0761 0.22 -0.4
876,382 - PP_0761 0.22 +1.4
876,621 + PP_0761 0.46 -0.4
876,621 + PP_0761 0.46 +0.3
876,650 - PP_0761 0.49 +1.3
876,863 + PP_0761 0.70 -0.3
876,864 - PP_0761 0.70 -0.1

Or see this region's nucleotide sequence