Strain Fitness in Pseudomonas putida KT2440 around PP_0685

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0683 and PP_0684 are separated by 85 nucleotidesPP_0684 and PP_0685 are separated by 26 nucleotidesPP_0685 and PP_0686 are separated by 84 nucleotidesPP_0686 and PP_0687 are separated by 160 nucleotides PP_0683: PP_0683 - conserved protein of unknown function, at 797,553 to 797,942 _0683 PP_0684: PP_0684 - FKBP-type peptidyl-prolyl cis-trans isomerase, at 798,028 to 798,645 _0684 PP_0685: PP_0685 - conserved protein of unknown function, at 798,672 to 798,917 _0685 PP_0686: PP_0686 - conserved protein of unknown function, at 799,002 to 799,343 _0686 PP_0687: PP_0687 - octaprenyl diphosphate synthase, at 799,504 to 800,472 _0687 Position (kb) 798 799Strain fitness (log2 ratio) -2 -1 0 1at 797.718 kb on + strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.719 kb on - strand, within PP_0683at 797.940 kb on + strandat 797.940 kb on + strandat 797.967 kb on - strandat 798.070 kb on + strandat 798.070 kb on + strandat 798.070 kb on + strandat 798.399 kb on + strand, within PP_0684at 798.400 kb on - strand, within PP_0684at 798.407 kb on - strandat 798.448 kb on + strandat 798.448 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.547 kb on + strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.548 kb on - strand, within PP_0684at 798.569 kb on - strand, within PP_0684at 798.643 kb on + strandat 798.644 kb on - strandat 798.644 kb on - strandat 798.713 kb on - strand, within PP_0685at 798.713 kb on - strand, within PP_0685at 798.874 kb on + strand, within PP_0685at 798.910 kb on + strandat 798.910 kb on + strandat 798.911 kb on - strandat 798.911 kb on - strandat 798.921 kb on + strandat 798.921 kb on + strandat 798.922 kb on - strandat 798.922 kb on - strandat 798.922 kb on - strandat 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.297 kb on + strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.298 kb on - strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.303 kb on + strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.304 kb on - strand, within PP_0686at 799.374 kb on + strandat 799.374 kb on + strandat 799.389 kb on + strandat 799.390 kb on - strandat 799.390 kb on - strandat 799.396 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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797,718 + PP_0683 0.42 -0.8
797,719 - PP_0683 0.43 +0.6
797,719 - PP_0683 0.43 +1.5
797,719 - PP_0683 0.43 +0.1
797,940 + +0.2
797,940 + -0.2
797,967 - -1.7
798,070 + +0.5
798,070 + +0.4
798,070 + -0.2
798,399 + PP_0684 0.60 +0.8
798,400 - PP_0684 0.60 -0.2
798,407 - -0.9
798,448 + +0.0
798,448 + PP_0684 0.68 -0.2
798,547 + PP_0684 0.84 -0.9
798,547 + PP_0684 0.84 +0.4
798,547 + PP_0684 0.84 +0.4
798,547 + PP_0684 0.84 +0.8
798,547 + PP_0684 0.84 -1.4
798,548 - PP_0684 0.84 -0.5
798,548 - PP_0684 0.84 -0.8
798,548 - PP_0684 0.84 +0.8
798,548 - PP_0684 0.84 +0.0
798,548 - PP_0684 0.84 -0.6
798,548 - PP_0684 0.84 -0.4
798,569 - PP_0684 0.88 -2.0
798,643 + -0.5
798,644 - -0.7
798,644 - +0.5
798,713 - PP_0685 0.17 -1.4
798,713 - PP_0685 0.17 -1.8
798,874 + PP_0685 0.82 -0.9
798,910 + -0.9
798,910 + -0.1
798,911 - -1.8
798,911 - +0.1
798,921 + -1.0
798,921 + -1.3
798,922 - -1.4
798,922 - -0.4
798,922 - -0.9
799,297 + PP_0686 0.86 -0.0
799,297 + PP_0686 0.86 +0.8
799,297 + PP_0686 0.86 +0.5
799,297 + PP_0686 0.86 +0.4
799,297 + PP_0686 0.86 -0.6
799,297 + PP_0686 0.86 +0.4
799,297 + PP_0686 0.86 +0.4
799,297 + PP_0686 0.86 +0.4
799,297 + PP_0686 0.86 +0.2
799,297 + PP_0686 0.86 -0.5
799,298 - PP_0686 0.87 -0.2
799,298 - PP_0686 0.87 -0.2
799,298 - PP_0686 0.87 +1.1
799,298 - PP_0686 0.87 -2.1
799,298 - PP_0686 0.87 +0.6
799,298 - PP_0686 0.87 +0.2
799,298 - PP_0686 0.87 +0.6
799,298 - PP_0686 0.87 +0.8
799,298 - PP_0686 0.87 -0.2
799,298 - PP_0686 0.87 -0.4
799,303 + PP_0686 0.88 +0.6
799,303 + PP_0686 0.88 -0.1
799,303 + PP_0686 0.88 -0.2
799,304 - PP_0686 0.88 +0.2
799,304 - PP_0686 0.88 +0.5
799,304 - PP_0686 0.88 +1.1
799,304 - PP_0686 0.88 +0.1
799,374 + -1.6
799,374 + +1.2
799,389 + +0.0
799,390 - -2.0
799,390 - +1.2
799,396 + +0.3

Or see this region's nucleotide sequence