Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0553 and PP_0554 overlap by 4 nucleotides PP_0554 and PP_0555 are separated by 33 nucleotides
PP_0553: PP_0553 - Dihydrolipoyllysine-residue acetyltransferase component of acetoin cleaving system, at 641,880 to 642,986
_0553
PP_0554: PP_0554 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit beta, at 642,983 to 644,005
_0554
PP_0555: PP_0555 - Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha, at 644,039 to 645,016
_0555
Position (kb)
642
643
644
645 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 642.262 kb on + strand, within PP_0553 at 642.263 kb on - strand, within PP_0553 at 642.634 kb on - strand, within PP_0553 at 642.634 kb on - strand, within PP_0553 at 642.711 kb on + strand, within PP_0553 at 642.711 kb on + strand, within PP_0553 at 642.711 kb on + strand, within PP_0553 at 642.712 kb on - strand, within PP_0553 at 642.712 kb on - strand, within PP_0553 at 642.962 kb on + strand at 642.963 kb on - strand at 642.963 kb on - strand at 642.972 kb on - strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.053 kb on + strand at 643.054 kb on - strand at 643.054 kb on - strand at 643.054 kb on - strand at 643.091 kb on - strand, within PP_0554 at 643.350 kb on + strand, within PP_0554 at 643.351 kb on - strand, within PP_0554 at 643.355 kb on - strand, within PP_0554 at 643.413 kb on + strand, within PP_0554 at 643.413 kb on + strand, within PP_0554 at 643.414 kb on - strand, within PP_0554 at 643.414 kb on - strand, within PP_0554 at 643.414 kb on - strand, within PP_0554 at 643.414 kb on - strand, within PP_0554 at 643.414 kb on - strand, within PP_0554 at 643.446 kb on + strand, within PP_0554 at 643.446 kb on + strand, within PP_0554 at 643.446 kb on + strand, within PP_0554 at 643.447 kb on - strand, within PP_0554 at 643.521 kb on + strand, within PP_0554 at 643.522 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.621 kb on - strand, within PP_0554 at 643.668 kb on + strand, within PP_0554 at 643.668 kb on + strand, within PP_0554 at 643.669 kb on - strand, within PP_0554 at 643.839 kb on + strand, within PP_0554 at 643.839 kb on + strand, within PP_0554 at 643.840 kb on - strand, within PP_0554 at 643.931 kb on + strand at 643.931 kb on + strand at 643.931 kb on + strand at 643.932 kb on - strand at 643.932 kb on - strand at 643.932 kb on - strand at 643.932 kb on - strand at 643.987 kb on - strand at 644.055 kb on + strand at 644.259 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.289 kb on + strand, within PP_0555 at 644.292 kb on + strand, within PP_0555 at 644.370 kb on + strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.371 kb on - strand, within PP_0555 at 644.372 kb on + strand, within PP_0555 at 644.485 kb on - strand, within PP_0555 at 644.754 kb on + strand, within PP_0555 at 644.755 kb on - strand, within PP_0555 at 644.889 kb on + strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.890 kb on - strand, within PP_0555 at 644.976 kb on + strand at 644.976 kb on + strand at 644.977 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand at 644.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 642,262 + PP_0553 0.35 +0.2 642,263 - PP_0553 0.35 +0.7 642,634 - PP_0553 0.68 -0.1 642,634 - PP_0553 0.68 -0.4 642,711 + PP_0553 0.75 +0.1 642,711 + PP_0553 0.75 +0.5 642,711 + PP_0553 0.75 +0.2 642,712 - PP_0553 0.75 -0.5 642,712 - PP_0553 0.75 +0.8 642,962 + -0.0 642,963 - +0.4 642,963 - +1.3 642,972 - +1.0 643,053 + -0.6 643,053 + -0.0 643,053 + -1.4 643,053 + -0.1 643,053 + +0.8 643,053 + -2.2 643,053 + +0.7 643,053 + +0.2 643,053 + +0.8 643,054 - +0.2 643,054 - -1.1 643,054 - +0.4 643,091 - PP_0554 0.11 -0.4 643,350 + PP_0554 0.36 +0.2 643,351 - PP_0554 0.36 +0.2 643,355 - PP_0554 0.36 +0.9 643,413 + PP_0554 0.42 +0.6 643,413 + PP_0554 0.42 +0.9 643,414 - PP_0554 0.42 +0.3 643,414 - PP_0554 0.42 -0.1 643,414 - PP_0554 0.42 +0.8 643,414 - PP_0554 0.42 -0.1 643,414 - PP_0554 0.42 +0.0 643,446 + PP_0554 0.45 +0.4 643,446 + PP_0554 0.45 -0.9 643,446 + PP_0554 0.45 -0.3 643,447 - PP_0554 0.45 -0.5 643,521 + PP_0554 0.53 -1.3 643,522 - PP_0554 0.53 -0.7 643,621 - PP_0554 0.62 +1.9 643,621 - PP_0554 0.62 +0.1 643,621 - PP_0554 0.62 -0.0 643,621 - PP_0554 0.62 -0.5 643,621 - PP_0554 0.62 +0.8 643,621 - PP_0554 0.62 -1.8 643,621 - PP_0554 0.62 +0.2 643,668 + PP_0554 0.67 +0.0 643,668 + PP_0554 0.67 +0.2 643,669 - PP_0554 0.67 +0.1 643,839 + PP_0554 0.84 -0.6 643,839 + PP_0554 0.84 -0.6 643,840 - PP_0554 0.84 -0.6 643,931 + -0.3 643,931 + -0.4 643,931 + +0.4 643,932 - +0.2 643,932 - -0.0 643,932 - +0.3 643,932 - +0.9 643,987 - +0.5 644,055 + +0.3 644,259 + PP_0555 0.22 +0.4 644,289 + PP_0555 0.26 -0.2 644,289 + PP_0555 0.26 -0.1 644,289 + PP_0555 0.26 -0.2 644,292 + PP_0555 0.26 +0.8 644,370 + PP_0555 0.34 -0.3 644,371 - PP_0555 0.34 -0.1 644,371 - PP_0555 0.34 -0.3 644,372 + PP_0555 0.34 -0.8 644,485 - PP_0555 0.46 +0.2 644,754 + PP_0555 0.73 +0.8 644,755 - PP_0555 0.73 -0.4 644,889 + PP_0555 0.87 -0.6 644,890 - PP_0555 0.87 +0.5 644,890 - PP_0555 0.87 +0.6 644,976 + +0.4 644,976 + -0.3 644,977 - +1.7 644,999 - -0.1 644,999 - -0.2 644,999 - +0.9
Or see this region's nucleotide sequence