Strain Fitness in Pseudomonas putida KT2440 around PP_0346

Experiment: R2A with Fusaric 480 ug/mL

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0344 and PP_0345 overlap by 1 nucleotidesPP_0345 and PP_0346 overlap by 4 nucleotidesPP_0346 and PP_0347 overlap by 1 nucleotides PP_0344: PP_0344 - lipopolysaccharide core heptose (I) kinase, at 417,412 to 418,218 _0344 PP_0345: PP_0345 - putative Heptose kinase WapP, at 418,218 to 418,952 _0345 PP_0346: PP_0346 - putative Heptose kinase WapQ, at 418,949 to 419,701 _0346 PP_0347: PP_0347 - conserved protein of unknown function, at 419,701 to 421,143 _0347 Position (kb) 418 419 420Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.362 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.365 kb on + strand, within PP_0345at 418.377 kb on + strand, within PP_0345at 418.732 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 418.872 kb on + strand, within PP_0345at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.111 kb on + strand, within PP_0346at 419.114 kb on + strandat 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.114 kb on + strand, within PP_0346at 419.135 kb on + strand, within PP_0346at 419.146 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.595 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.599 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346at 419.615 kb on + strand, within PP_0346

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL
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418,362 + PP_0345 0.20 -2.7
418,362 + PP_0345 0.20 -2.8
418,362 + PP_0345 0.20 -2.8
418,365 + PP_0345 0.20 -3.0
418,365 + PP_0345 0.20 -0.6
418,365 + PP_0345 0.20 -3.8
418,377 + PP_0345 0.22 -2.4
418,732 + PP_0345 0.70 -3.7
418,872 + PP_0345 0.89 -2.3
418,872 + PP_0345 0.89 -2.7
419,111 + PP_0346 0.22 -3.2
419,111 + PP_0346 0.22 -3.6
419,111 + PP_0346 0.22 -3.1
419,111 + PP_0346 0.22 -3.7
419,114 + -1.5
419,114 + PP_0346 0.22 -3.5
419,114 + PP_0346 0.22 -4.6
419,114 + PP_0346 0.22 -2.9
419,114 + PP_0346 0.22 -4.7
419,135 + PP_0346 0.25 -3.7
419,146 + PP_0346 0.26 -4.9
419,595 + PP_0346 0.86 -4.5
419,595 + PP_0346 0.86 -2.3
419,595 + PP_0346 0.86 -4.2
419,595 + PP_0346 0.86 -4.2
419,595 + PP_0346 0.86 -4.6
419,595 + PP_0346 0.86 -4.9
419,595 + PP_0346 0.86 -3.9
419,599 + PP_0346 0.86 -2.9
419,599 + PP_0346 0.86 -4.8
419,615 + PP_0346 0.88 -4.3
419,615 + PP_0346 0.88 -2.4
419,615 + PP_0346 0.88 -4.2

Or see this region's nucleotide sequence