Experiment: R2A with Fusaric 480 ug/mL
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4927 and PP_4928 are separated by 187 nucleotides PP_4928 and PP_4929 are separated by 11 nucleotides PP_4929 and PP_4930 are separated by 71 nucleotides
PP_4927: PP_4927 - Cyclolysin secretion/processing ATP-binding protein CyaB, at 5,605,943 to 5,608,138
_4927
PP_4928: PP_4928 - 3-deoxy-D-manno-octulosonic acid transferase, at 5,608,326 to 5,609,597
_4928
PP_4929: PP_4929 - Transcriptional regulator, LysR family, at 5,609,609 to 5,610,514
_4929
PP_4930: PP_4930 - putative small multidrug resistance protein, at 5,610,586 to 5,610,918
_4930
Position (kb) 5608
5609
5610 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 5607.424 kb on + strand, within PP_4927 at 5607.425 kb on - strand, within PP_4927 at 5607.425 kb on - strand, within PP_4927 at 5607.438 kb on + strand, within PP_4927 at 5607.439 kb on - strand, within PP_4927 at 5607.439 kb on - strand, within PP_4927 at 5607.439 kb on - strand, within PP_4927 at 5607.442 kb on + strand, within PP_4927 at 5607.442 kb on + strand, within PP_4927 at 5607.442 kb on + strand, within PP_4927 at 5607.443 kb on - strand, within PP_4927 at 5607.545 kb on + strand, within PP_4927 at 5607.546 kb on - strand, within PP_4927 at 5607.631 kb on - strand, within PP_4927 at 5607.659 kb on - strand, within PP_4927 at 5607.659 kb on - strand, within PP_4927 at 5607.825 kb on + strand, within PP_4927 at 5607.826 kb on - strand, within PP_4927 at 5607.838 kb on + strand, within PP_4927 at 5607.839 kb on - strand, within PP_4927 at 5607.851 kb on - strand, within PP_4927 at 5607.935 kb on + strand at 5607.936 kb on - strand at 5608.101 kb on - strand at 5608.127 kb on - strand at 5608.140 kb on - strand at 5608.260 kb on - strand at 5608.285 kb on + strand at 5608.285 kb on + strand at 5608.286 kb on - strand at 5608.315 kb on + strand at 5608.316 kb on - strand at 5608.316 kb on - strand at 5608.324 kb on + strand at 5609.582 kb on - strand at 5609.605 kb on - strand at 5609.754 kb on + strand, within PP_4929 at 5609.754 kb on + strand, within PP_4929 at 5609.754 kb on + strand, within PP_4929 at 5609.755 kb on - strand, within PP_4929 at 5609.763 kb on + strand, within PP_4929 at 5609.829 kb on + strand, within PP_4929 at 5609.829 kb on + strand, within PP_4929 at 5609.850 kb on - strand, within PP_4929 at 5610.553 kb on + strand at 5610.553 kb on + strand at 5610.553 kb on + strand at 5610.553 kb on + strand at 5610.554 kb on - strand at 5610.595 kb on + strand at 5610.596 kb on - strand at 5610.597 kb on + strand at 5610.597 kb on + strand at 5610.597 kb on + strand at 5610.597 kb on + strand at 5610.597 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Fusaric 480 ug/mL remove 5,607,424 + PP_4927 0.67 -1.7 5,607,425 - PP_4927 0.67 +0.5 5,607,425 - PP_4927 0.67 -1.5 5,607,438 + PP_4927 0.68 +1.3 5,607,439 - PP_4927 0.68 -0.8 5,607,439 - PP_4927 0.68 +1.3 5,607,439 - PP_4927 0.68 +0.7 5,607,442 + PP_4927 0.68 -3.1 5,607,442 + PP_4927 0.68 -1.1 5,607,442 + PP_4927 0.68 +0.3 5,607,443 - PP_4927 0.68 -1.8 5,607,545 + PP_4927 0.73 -0.4 5,607,546 - PP_4927 0.73 -1.5 5,607,631 - PP_4927 0.77 -0.1 5,607,659 - PP_4927 0.78 +0.1 5,607,659 - PP_4927 0.78 -0.4 5,607,825 + PP_4927 0.86 -2.1 5,607,826 - PP_4927 0.86 -0.8 5,607,838 + PP_4927 0.86 -0.2 5,607,839 - PP_4927 0.86 -2.5 5,607,851 - PP_4927 0.87 +0.5 5,607,935 + -1.1 5,607,936 - -1.7 5,608,101 - -1.6 5,608,127 - -3.2 5,608,140 - +0.0 5,608,260 - +0.4 5,608,285 + -1.1 5,608,285 + -0.5 5,608,286 - +1.0 5,608,315 + -2.5 5,608,316 - +0.9 5,608,316 - +0.9 5,608,324 + +0.2 5,609,582 - -1.7 5,609,605 - -0.8 5,609,754 + PP_4929 0.16 +0.9 5,609,754 + PP_4929 0.16 +0.4 5,609,754 + PP_4929 0.16 -0.5 5,609,755 - PP_4929 0.16 +0.2 5,609,763 + PP_4929 0.17 +1.6 5,609,829 + PP_4929 0.24 +0.0 5,609,829 + PP_4929 0.24 +0.7 5,609,850 - PP_4929 0.27 -2.2 5,610,553 + -0.3 5,610,553 + -0.9 5,610,553 + +1.1 5,610,553 + -0.2 5,610,554 - +0.5 5,610,595 + -0.2 5,610,596 - -0.8 5,610,597 + -0.6 5,610,597 + +0.7 5,610,597 + +1.5 5,610,597 + -0.8 5,610,597 + +0.2
Or see this region's nucleotide sequence