Strain Fitness in Pseudomonas putida KT2440 around PP_4927

Experiment: R2A with Fusaric 480 ug/mL

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Fusaric 480 ug/mL
5,604,978	+		PP_4926	0.32	+0.4
5,604,979	-		PP_4926	0.32	+0.0
5,605,204	+		PP_4926	0.48	-0.1
5,605,204	+		PP_4926	0.48	-0.9
5,605,204	+		PP_4926	0.48	-0.8
5,605,204	+		PP_4926	0.48	-0.3
5,605,205	-		PP_4926	0.48	-2.3
5,605,205	-		PP_4926	0.48	+0.0
5,605,381	+		PP_4926	0.60	+0.9
5,605,382	-		PP_4926	0.60	-0.6
5,605,660	-		PP_4926	0.80	+1.7
5,605,780	+		PP_4926	0.88	-0.8
5,605,857	+				+0.7
5,605,858	-				-2.8
5,605,946	+				-0.0
5,605,977	+				+0.4
5,605,983	+				+1.1
5,605,983	+				+0.3
5,605,983	+				-1.0
5,605,983	+				+0.7
5,605,983	+				-1.0
5,605,983	+				-1.0
5,605,983	+				+0.4
5,605,983	+				-2.0
5,605,983	+				+0.5
5,605,983	+				-0.4
5,605,983	+				-0.3
5,605,983	+				-0.1
5,605,984	-				-0.1
5,605,984	-				+0.4
5,605,984	-				-2.9
5,605,984	-				+0.7
5,605,984	-				-2.1
5,605,984	-				+0.5
5,605,984	-				-0.4
5,606,076	-				-1.6
5,606,164	-		PP_4927	0.10	+0.5
5,606,164	-		PP_4927	0.10	-0.7
5,606,164	-		PP_4927	0.10	-0.2
5,606,164	-		PP_4927	0.10	-1.7
5,606,164	-		PP_4927	0.10	+0.3
5,606,234	+		PP_4927	0.13	-1.0
5,606,234	+		PP_4927	0.13	-0.7
5,606,235	-		PP_4927	0.13	-0.4
5,606,235	-		PP_4927	0.13	-0.4
5,606,352	-		PP_4927	0.19	+1.1
5,606,499	-		PP_4927	0.25	+0.4
5,606,520	+		PP_4927	0.26	+1.2
5,606,573	+		PP_4927	0.29	-1.1
5,606,573	+		PP_4927	0.29	+0.1
5,606,574	-		PP_4927	0.29	+1.3
5,606,574	-		PP_4927	0.29	+1.1
5,606,574	-		PP_4927	0.29	+0.8
5,606,574	-				-0.4
5,606,582	+		PP_4927	0.29	-0.3
5,606,726	-		PP_4927	0.36	+0.3
5,606,762	+		PP_4927	0.37	-0.6
5,606,910	-		PP_4927	0.44	-1.8
5,606,987	+		PP_4927	0.48	-0.0
5,606,987	+		PP_4927	0.48	-1.9
5,606,987	+		PP_4927	0.48	+0.2
5,606,987	+		PP_4927	0.48	+1.3
5,606,987	+		PP_4927	0.48	+0.4
5,606,988	-		PP_4927	0.48	+0.3
5,606,988	-		PP_4927	0.48	-0.1
5,606,988	-		PP_4927	0.48	-0.1
5,606,991	+		PP_4927	0.48	-0.8
5,606,991	+		PP_4927	0.48	+0.6
5,606,991	+		PP_4927	0.48	+0.9
5,606,991	+		PP_4927	0.48	-1.0
5,606,991	+		PP_4927	0.48	+1.0
5,606,991	+		PP_4927	0.48	+1.6
5,606,991	+		PP_4927	0.48	-0.5
5,606,992	-		PP_4927	0.48	+0.6
5,606,992	-		PP_4927	0.48	-1.9
5,606,992	-		PP_4927	0.48	+0.8
5,606,992	-		PP_4927	0.48	-0.4
5,606,992	-		PP_4927	0.48	-2.7
5,606,992	-		PP_4927	0.48	+1.9
5,607,146	-		PP_4927	0.55	-0.8
5,607,212	-		PP_4927	0.58	+0.6
5,607,214	-		PP_4927	0.58	+0.0
5,607,263	+		PP_4927	0.60	-1.4
5,607,295	+		PP_4927	0.62	+1.1
5,607,424	+		PP_4927	0.67	-1.7
5,607,425	-		PP_4927	0.67	+0.5
5,607,425	-		PP_4927	0.67	-1.5
5,607,438	+		PP_4927	0.68	+1.3
5,607,439	-		PP_4927	0.68	-0.8
5,607,439	-		PP_4927	0.68	+1.3
5,607,439	-		PP_4927	0.68	+0.7
5,607,442	+		PP_4927	0.68	-3.1
5,607,442	+		PP_4927	0.68	-1.1
5,607,442	+		PP_4927	0.68	+0.3
5,607,443	-		PP_4927	0.68	-1.8
5,607,545	+		PP_4927	0.73	-0.4
5,607,546	-		PP_4927	0.73	-1.5
5,607,631	-		PP_4927	0.77	-0.1
5,607,659	-		PP_4927	0.78	+0.1
5,607,659	-		PP_4927	0.78	-0.4
5,607,825	+		PP_4927	0.86	-2.1
5,607,826	-		PP_4927	0.86	-0.8
5,607,838	+		PP_4927	0.86	-0.2
5,607,839	-		PP_4927	0.86	-2.5
5,607,851	-		PP_4927	0.87	+0.5
5,607,935	+				-1.1
5,607,936	-				-1.7
5,608,101	-				-1.6
5,608,127	-				-3.2
5,608,140	-				+0.0
5,608,260	-				+0.4
5,608,285	+				-1.1
5,608,285	+				-0.5
5,608,286	-				+1.0
5,608,315	+				-2.5
5,608,316	-				+0.9
5,608,316	-				+0.9
5,608,324	+				+0.2